CF834421

Overview
NameCF834421
Unique NameCF834421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834421 vs. ExPASy Swiss-Prot
Match: KCS21_ARATH (3-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana GN=KCS21 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.594e-42
Identity = 86/223 (38.57%), Postives = 131/223 (58.74%), Query Frame = -2 
Query:  180 NCLFRMGGAAILLXXXXXXXXXSKYQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATLVAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTWQIAFGSGFKCNSAVWQALRTINPAKEKNPWIEEIHEFP 836
            NCLFR GG+++LL         +  +L+  VR H G+DD+ Y+C  Q ED     G  L+K L   A  AL  N+  L P VLP+ E + +      K+    K +P       + K   +HFCIH GGRA+++ + K+L L+E+ +EP+RM L+RFGNTSS  LWY L Y EAK R++KG++   ++ G+GF+ N+ VW+ L+ ++   +KN W + +  +P
Sbjct:  218 NCLFRAGGSSVLLTNAARFKNQALMKLVTVVRAHVGSDDEAYSCCIQMEDRDGHPGFLLTKYLKKAAARALTKNLQVLLPRVLPVKELIRYAIVRALKRRTSAKREPASSGIGLNLKTGLQHFCIHPGGRAIIEGVGKSLGLTEFDIEPARMALHRFGNTSSGGLWYVLGYMEAKNRLKKGEKILMMSMGAGFESNNCVWEVLKDLD---DKNVWEDSVDRYP 437
The following BLAST results are available for this feature:
BLAST of CF834421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS21_ARATH5.594e-4238.573-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05I02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834421 ID=CF834421; Name=CF834421; organism=Citrus sinensis; type=EST; length=837bp
CCTTTTTTTTTTTTTAATGAAAATCAAGAAATAATTTTATTGAAACTAAA
TATATGCATCCAAATATTACATATATAATCGTATTGTGAAGTATGCAAAT
CAATCAGATATAATACTCCCTCCATTGAAGGAAATTAAGAAGCCTTCAAA
TCAACAGCTGCTACTCTAGGGACATGAACAGGAAACTCATGAATCTCTTC
AATCCAAGGATTCTTCTCCTTTGCAGGATTGATAGTCCTCAATGCTTGCC
ACACAGCACTGTTACACTTGAATCCTGACCCAAATGCTATCTGCCATGTT
CTGTCTCCTTTTCTCATTCTCCCCTTAGCCTCAGAGTAAGCCAATTCATA
CCACAAAGAGCTGCTAGAAGTGTTACCAAATCTGTAAAGAGTCATTCTTG
AAGGCTCCATATGCCATTCACTGAGCTCAAGATTCTTCTCTAGCTCATCT
AGCACTGCTCTGCCTCCAGCATGGATGCAGAAATGCTCAAAAGCCAACTT
AAAATCTGGGATATATGGCTTGATTTTCATTTTAAAGACTTTTTTAGCAA
CCAAAGTTGCAAAAAATAAGAGTTGTTCTGACATCGGGAGGACTATTGGT
CCCAGTGTTGTGATGTTAGTCTTAAGGGCTTCTCCAGCGACAGCCATGAG
GTCCTTTGAGAGTGAAACTCCAACTCTTTTGGTATCATCTTCTCTTTGGA
AGACACAGTTGTAGCACTTGTCATCAGCTCCCTTGTGGGTCCTTACAGTG
TGGATGAGTTGGTACTTTGATCGGCGGCGATCGGAGGATCGGTTAGATAA
AAGGATAGCGGCACCACCCATGCGGAAGAGGCAATTT
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