CF834520

Overview
NameCF834520
Unique NameCF834520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834520 vs. ExPASy Swiss-Prot
Match: RS27A_DICDI (40S ribosomal protein S27a OS=Dictyostelium discoideum GN=ubqC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = -2 
Query:  207 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKC 341
            LAVL++YK D++GK++R+ +ECP   CGAG FMA H +R YCGKC
Sbjct:   25 LAVLKYYKFDENGKIKRVLRECPAETCGAGVFMAQHANRQYCGKC 69
The following BLAST results are available for this feature:
BLAST of CF834520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
RS27A_DICDI3.728e-1160.0040S ribosomal protein S27a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834520 ID=CF834520; Name=CF834520; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTAAAATTTAAAACAGATAACCATTTAATTAAAAC
GCTCCAGCAAACAAGTATATAGTCAAACAAAATTACGAAAGAGTCATAAT
TTTTGAACCACAAAAACCATAGTAATTAATACTAATTAAAAATAGCAAAA
CAACCACCTAATCTCGATCAATCACCGCCAGCCTTCTGGTAAACATAGGG
GAGTCCACACTTGCCGCAGTAGTGCCTGTCAAAGTGGTTAGCCATGAAGG
TGCCGGCTCCACACTCAGCATTCGGACACTCCTTCCTCAGCCTCTGGACC
TTTCCAGAATCATCGACCTTGTAAAACTGCAAGACGGCGAGCTTGACCTT
CTTCTTCTTGTGCTTGATCTTTTTCGGCTTGGTGTAGGTCTTCTTCTTAC
GCTTCTTCGCGCCACCACGGAGACGGAGGACGAGGTGGAGTGTTGACTCC
TTTTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCC
GGCGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGA
TCTTGGCCTTGACATTGTCGATGGTGTCCGATGAGGAGTCGAGCGCTTTT
CTCTGAAAATTTCCGCTCAACTTGAAAAAGTTGCGAGAATGGAACCAGGT
TTTGAGGATACGGAATTCCCGTACTGGCTGAAGTTCAAGTGCACCG
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