CF834570

Overview
NameCF834570
Unique NameCF834570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.152e-11
Identity = 33/47 (70.21%), Postives = 36/47 (76.60%), Query Frame = -3
Query:  223 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKP 363
            M+GCTDA QV+ EV E +K YP  FV IIG  NKRQVQCISFIA KP
Sbjct:  130 MFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.152e-11
Identity = 33/47 (70.21%), Postives = 36/47 (76.60%), Query Frame = -3
Query:  223 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKP 363
            M+GCTDA QV+ EV E +K YP  FV IIG  NKRQVQCISFIA KP
Sbjct:  126 MFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.504e-11
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTD+ QVL+E+   +KEYP++F+ IIG  N RQVQCISFIA KP G
Sbjct:  133 MFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPKG 181          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVL EV E +K YP ++V IIG  N RQVQCISFIA KP G
Sbjct:  131 MFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVL EV E +K YP ++V IIG  N RQVQCISFIA KP G
Sbjct:  131 MFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVL EV E +K YP ++V IIG  N RQVQCISFIA KP G
Sbjct:  131 MFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVL EV E +K YP ++V IIG  N RQVQCISFIA KP G
Sbjct:  131 MFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVL EV E +K YP ++V IIG  N RQVQCISFIA KP G
Sbjct:  132 MFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.566e-11
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVL EV E +K YP +++ IIG  N RQVQCISFIA KP G
Sbjct:  131 MFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.566e-11
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVLKE+ E+ K +P  +  IIG  N RQVQCISF+A KPPG
Sbjct:  133 MFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
The following BLAST results are available for this feature:
BLAST of CF834570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RBS2_LEMGI1.152e-1170.21Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS1_LEMGI1.152e-1170.21Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_GOSHI1.504e-1163.27Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL1.965e-1167.35Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS3B_SOLLC1.965e-1167.35Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC1.965e-1167.35Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS2A_SOLLC1.965e-1167.35Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS1_SOLLC1.965e-1167.35Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TOBAC2.566e-1165.31Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES2.566e-1163.27Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834570 ID=CF834570; Name=CF834570; organism=Citrus sinensis; type=EST; length=365bp
AAGGATTCAATTATTAAAATATATATAAAAAAAAAAAAAAGAACCCTTTG
TTCGGGGAGAAAACCAAAAAAGTTTGAGCAGCAGCAACATGATCCTAATT
ACAAATTAACCGCGAACCGAACCCCCATTGATCGAATGATCATTATGGGG
GTTACACATAATAATAATCAACAATATTGCCTGGGGGGTTACCCAAATTT
AATTGGGAACCCATACGCCTGGTGGCTTGGCAGCAATGAAACTGATGCAC
TGCACTTGACGCTTGTTGACCAATCCGATAATTCCGACGAATGAATGTGG
GTATTCCTTCTGGACCTCCCCAACCTCCTTCAAAACCTGGGGTGCATCTG
TGCACCCATACATGG
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