CF834570

Overview
NameCF834570
Unique NameCF834570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.566e-11
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVL EV E +K YP +++ IIG  N RQVQCISFIA KP G
Sbjct:  132 MFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.566e-11
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVL EV E +K YP +++ IIG  N RQVQCISFIA KP G
Sbjct:  131 MFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.351e-11
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = -3
Query:  223 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKP 363
            M+GCTDA QV+KE  E +KEYP +F+ +IG  N RQVQC+SFI  KP
Sbjct:  132 MFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.351e-11
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = -3
Query:  223 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKP 363
            M+GCTDA QV+KE  E +KEYP +F+ +IG  N RQVQC+SFI  KP
Sbjct:  132 MFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = -3
Query:  223 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKP 363
            M+GCTDA QVL EV E +K YP +++ IIG  N RQVQCISFIA KP
Sbjct:  131 MFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = -3
Query:  223 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKP 363
            M+GCTDA QV+KE  E +KEYP +F+ +IG  N RQVQC+SFI  +P
Sbjct:  132 MFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
The following BLAST results are available for this feature:
BLAST of CF834570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RBS1_SOLTU2.566e-1165.31Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_NICSY2.566e-1165.31Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FRIAG3.351e-1161.70Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FRIAG3.351e-1161.70Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_CAPAN7.465e-1165.96Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FRIAG7.465e-1159.57Ribulose bisphosphate carboxylase small chain 1/4,... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834570 ID=CF834570; Name=CF834570; organism=Citrus sinensis; type=EST; length=365bp
AAGGATTCAATTATTAAAATATATATAAAAAAAAAAAAAAGAACCCTTTG
TTCGGGGAGAAAACCAAAAAAGTTTGAGCAGCAGCAACATGATCCTAATT
ACAAATTAACCGCGAACCGAACCCCCATTGATCGAATGATCATTATGGGG
GTTACACATAATAATAATCAACAATATTGCCTGGGGGGTTACCCAAATTT
AATTGGGAACCCATACGCCTGGTGGCTTGGCAGCAATGAAACTGATGCAC
TGCACTTGACGCTTGTTGACCAATCCGATAATTCCGACGAATGAATGTGG
GTATTCCTTCTGGACCTCCCCAACCTCCTTCAAAACCTGGGGTGCATCTG
TGCACCCATACATGG
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