CF834601
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 4.096e-45 Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 2 Query: 425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712 MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTA AKNRH NGQGRWP KSA+F+LDLL Sbjct: 1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLL 96
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.192e-44 Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 2 Query: 425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712 MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTA AKNRH NGQGRWP KSA+F+LDLL Sbjct: 1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLL 96
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.485e-42 Identity = 82/96 (85.42%), Postives = 88/96 (91.67%), Query Frame = 2 Query: 425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712 MVKYS+EP NPTKS KA G DLRVHFKNTRETA A+RKLPLTKAKRYLEDV+AHKQAIPF R+CGGVGRTA AK+RH NGQGRWPVKSA+FILDLL Sbjct: 1 MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLL 96
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 6.768e-40 Identity = 77/96 (80.21%), Postives = 83/96 (86.46%), Query Frame = 2 Query: 425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712 MVKYS +P NPTKS KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDV+AHKQAIPF R+C GVGRTA KNR PNGQGRWP KSAKF+LDLL Sbjct: 1 MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLL 96
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39 Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 2 Query: 425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712 MVKYS++P NPTKS KA G DLRVHFKNTRETA A+R++PL KAKRYLEDV+AHKQAIPF R+C GVGRTA KNR PNGQGRWP KSA+F+LDLL Sbjct: 1 MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLL 96
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30 Identity = 67/96 (69.79%), Postives = 77/96 (80.21%), Query Frame = 2 Query: 425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712 M KYS +P+NP KSCKARGS LRVHFKNTRETA AI+K+ + KA RYL+DV+A KQ IPF RFCGGVGR A AK + QGRWPVKSA+F+L LL Sbjct: 1 MGKYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLL 95
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29 Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = 2 Query: 425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKN-RHPNGQGRWPVKSAKFILDLL 712 M +Y+ EP+NP KSCKARG DLRVHFKNTRETA AI+ + L KA RYL DV+ KQ IPF RF GGVGR A AKN + P QGRWP KSA+F++ LL Sbjct: 1 MGRYAIEPENPAKSCKARGEDLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLL 97
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.168e-29 Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = 2 Query: 425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712 M +YS+EPDNP KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++V+ K+ IPF RF GGVGR A AK + QGRWP KSA+F+L LL Sbjct: 1 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLL 95
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_AEDAL (60S ribosomal protein L17 OS=Aedes albopictus GN=RpL17 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27 Identity = 59/96 (61.46%), Postives = 77/96 (80.21%), Query Frame = 2 Query: 425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712 M +Y+KEPDNP KSCKARGS+LRVHFKNTRETA AI+++PL +A+++L++V K+ +PF RF GGVGR A AK+ + GRWP KSA+F+L LL Sbjct: 1 MGRYAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPLRRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKHWN-TSVGRWPKKSAEFLLQLL 95
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_AEDAE (60S ribosomal protein L17 OS=Aedes aegypti GN=RpL17 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27 Identity = 59/96 (61.46%), Postives = 77/96 (80.21%), Query Frame = 2 Query: 425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712 M +Y+KEPDNP KSCKARGS+LRVHFKNTRETA AI+++PL +A+++L++V K+ +PF RF GGVGR A AK+ + GRWP KSA+F+L LL Sbjct: 1 MGRYAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPLRRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKHWN-TSVGRWPKKSAEFLLQLL 95 The following BLAST results are available for this feature:
BLAST of CF834601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834601 ID=CF834601; Name=CF834601; organism=Citrus sinensis; type=EST; length=712bpback to top |