CF834601

Overview
NameCF834601
Unique NameCF834601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_LONON (60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 62/96 (64.58%), Postives = 74/96 (77.08%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +YS++P+NP KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++V   K+ IPF RF GGVGR A AK +    QGRWP KSA+F L LL
Sbjct:    1 MGRYSRDPENPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFPLQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_BIPLU (60S ribosomal protein L17 OS=Biphyllus lunatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +Y++EPDN  KSCKARGS+LRVHFKNT ETA+AIRK+PL +A  YL++V A K+ +PF RF GGVGR A AK +    QGRWP KSA+F+L LL
Sbjct:    1 MGRYAREPDNAGKSCKARGSNLRVHFKNTCETANAIRKMPLKRAVAYLKNVTAQKECVPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_CAEEL (60S ribosomal protein L17 OS=Caenorhabditis elegans GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 2
Query:  422 TMVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            T V YS+ P+N TKSCKARGSDLRVHFKNT E A A+R +PL +A+ +L  V  HK+ +PF RF GG+GR A  K  +   QGRWPVKSA F+LDLL
Sbjct:    2 TKVHYSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTT-QGRWPVKSADFLLDLL 97          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.121e-26
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR A AK +    QGRWP KSA+F+L +L
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHML 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.121e-26
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR A AK +    QGRWP KSA+F+L +L
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHML 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.121e-26
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +YS EPDN TKSCKARGS+LRVHFKNTRETA AI+++ L +A+RYL++V+A K+ +PF RF GGVGR A AK      QGRWP KSA+F+  LL
Sbjct:    1 MGRYSVEPDNATKSCKARGSNLRVHFKNTRETAQAIKRMSLRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAK-AWGCTQGRWPKKSAEFLWQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_ANOGA (60S ribosomal protein L17 OS=Anopheles gambiae GN=RpL17 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.121e-26
Identity = 58/96 (60.42%), Postives = 77/96 (80.21%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +Y+KEPDN +KSCK+RGS+LRVHFKNTRETA AI+++PL +A+R+L++V+  K+ +PF RF GGVGR A AK+      GRWP KSA+F+L LL
Sbjct:    1 MGRYAKEPDNASKSCKSRGSNLRVHFKNTRETALAIKRMPLRRAQRFLKNVIEKKECVPFRRFNGGVGRCAQAKH-WGTSVGRWPKKSAEFLLQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.464e-26
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR A AK +    QGRWP KSA+F+L +L
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHML 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.464e-26
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR A AK +    QGRWP KSA+F+L +L
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHML 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.464e-26
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR A AK +    QGRWP KSA+F+L +L
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHML 95          
The following BLAST results are available for this feature:
BLAST of CF834601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL17_LONON3.852e-2764.5860S ribosomal protein L17 OS=Lonomia obliqua GN=Rp... [more]
RL17_BIPLU3.852e-2763.5460S ribosomal protein L17 OS=Biphyllus lunatus GN=... [more]
RL17_CAEEL5.031e-2760.8260S ribosomal protein L17 OS=Caenorhabditis elegan... [more]
RL17_HUMAN1.121e-2661.4660S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA1.121e-2661.4660S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_ARGMO1.121e-2663.5460S ribosomal protein L17 OS=Argas monolakensis GN... [more]
RL17_ANOGA1.121e-2660.4260S ribosomal protein L17 OS=Anopheles gambiae GN=... [more]
RL17_RAT1.464e-2661.4660S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_MOUSE1.464e-2661.4660S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]
RL17_BOVIN1.464e-2661.4660S ribosomal protein L17 OS=Bos taurus GN=RPL17 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834601 ID=CF834601; Name=CF834601; organism=Citrus sinensis; type=EST; length=712bp
TTTTGAGTTTTCAATACGGTTCAGTCGAAGCCAGCAGAAATCTTTTGCCT
TCCTGATTTGAAGATTATGGGAACTCCTTGCGCAGGTTATACCGATTGGT
CGGAGGGTGGGGCCCCCCCATGGTTTTCACTTATTGCTGATGATGAAATT
AATGGAAATATTGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGA
TCACACTGGTTAAGAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGA
AAATAAAAGTATGGGTACTGTTATTACCCGTCAATTGTACGATGGTCTCA
GTTTGGTTCAGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCT
CTTTGTCTAGCTATTAAAAAAAGGAAAGCAAACCCACTTCACTGATACAG
AGGCAGCATCCAAAATCAGCCACCATGGTGAAGTACTCAAAAGAGCCTGA
CAATCCTACCAAGTCCTGCAAAGCCAGGGGCTCTGATCTCAGGGTTCATT
TTAAGAACACGAGAGAAACTGCCCATGCCATCAGGAAATTGCCTTTGACG
AAGGCTAAGAGGTATTTGGAGGATGTTATGGCCCATAAACAGGCCATTCC
CTTCACACGATTCTGCGGTGGTGTTGGACGTACTGCTCANGCAAAGAATA
GGCATCCAAATGGACAGGGACGATGGCCTGTCAAATCAGCAAAGTTCATT
CTTGACTTGCTC
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