CF834601

Overview
NameCF834601
Unique NameCF834601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_AGRLI (60S ribosomal protein L17 OS=Agriotes lineatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.464e-26
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +YS+EP+   KSCKARGS+LRVHFKNT ETA+AIRK+PL +A  YL++V+ HK+ +PF RF GGVGR A AK +    QGRWP KSA+F+L +L
Sbjct:    1 MGRYSREPEIAAKSCKARGSNLRVHFKNTCETANAIRKMPLKRAVAYLKNVIGHKECVPFRRFNGGVGRCAQAK-QWGTTQGRWPKKSAEFLLQML 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_IXOSC (60S ribosomal protein L17 OS=Ixodes scapularis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +YS EPDN TKSCKARGS+LRVHFKNTRETA AI+ + L +A+RYL++V+A K+ +PF RF GGVGR A AK      QGRWP KSA+F+  LL
Sbjct:    1 MGRYSVEPDNATKSCKARGSNLRVHFKNTRETAQAIKHMALRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAK-AFGCTQGRWPKKSAEFLWQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_PHLPP (60S ribosomal protein L17 OS=Phlebotomus papatasi GN=RpL17 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.261e-26
Identity = 57/96 (59.38%), Postives = 75/96 (78.12%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +Y++EPDN TKSCK+RGS LRVHFKNT E A+AI+ +PL +A+R+L++V+  K+ +PF RF GGVGR A AK +    QGRWP KSA+F+L LL
Sbjct:    1 MGRYAREPDNATKSCKSRGSHLRVHFKNTHEAANAIKHMPLRRAQRFLKNVVEKKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_DROPS (60S ribosomal protein L17 OS=Drosophila pseudoobscura pseudoobscura GN=RpL17 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.562e-26
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +YS+E DN TKSCKARG +LRVHFKNT ETA AI+++PL +A+R+L+ V+  K+ +PF RF GGVGR A AK +    QGRWP KSA+F+L LL
Sbjct:    1 MGRYSRESDNVTKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRFLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_DROYA (60S ribosomal protein L17 OS=Drosophila yakuba GN=RpL17 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +YS+E DN  KSCKARG +LRVHFKNT ETA AI+++PL +A+RYL+ V+  K+ +PF RF GGVGR A AK +    QGRWP KSA+F+L LL
Sbjct:    1 MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_DROME (60S ribosomal protein L17 OS=Drosophila melanogaster GN=RpL17 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +YS+E DN  KSCKARG +LRVHFKNT ETA AI+++PL +A+RYL+ V+  K+ +PF RF GGVGR A AK +    QGRWP KSA+F+L LL
Sbjct:    1 MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_DICDI (60S ribosomal protein L17 OS=Dictyostelium discoideum GN=rpl17 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.488e-26
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 2
Query:  434 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            YSK P NP KSCK+RGS+LR+HFKNTRE+A AI+ + LT+AK YL +V+AH++ IPF RF GGVGRT  AK      QGRWP KS + IL LL
Sbjct:    6 YSKTPSNPEKSCKSRGSNLRIHFKNTRESAMAIKGMLLTRAKAYLNNVLAHRECIPFRRFKGGVGRTGQAK-IFGTSQGRWPKKSVEHILSLL 97          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_DIACI (60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +YSKEP NPTKSCKARGS+LRVHFKNTRETA  I K+PL +A ++L++V    + +PF R+ GGVGR A AK +    QGRWP KSA F+L LL
Sbjct:    1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAK-QWGTTQGRWPRKSADFLLQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_CARGR (60S ribosomal protein L17 OS=Carabus granulatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +YS+EPD  +K+CKARGS+LRVHFKNTRETA AI+K+ L +A+ +L++V  HK+ +PF RF GGVGR + AK +    QGRWP KSA+F+L +L
Sbjct:    1 MGRYSREPDVASKTCKARGSNLRVHFKNTRETAMAIKKMSLRRAQAFLKNVTDHKECVPFRRFNGGVGRCSQAK-QWGTTQGRWPKKSAEFLLQML 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_MACHI (60S ribosomal protein L17 OS=Maconellicoccus hirsutus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.150e-25
Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M KY+K   NP KSC+ARGS+LRVHFKNTRETA  I+++PL +A ++L++V   ++ +PF RF GGVGR A AK +    QGRWP+KSA+F+L+LL
Sbjct:    1 MGKYAKNARNPAKSCRARGSNLRVHFKNTRETAKTIKRMPLRRAIQFLKNVQDKQECVPFRRFNGGVGRCAQAK-QWGTTQGRWPIKSAQFLLELL 95          
The following BLAST results are available for this feature:
BLAST of CF834601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL17_AGRLI1.464e-2661.4660S ribosomal protein L17 OS=Agriotes lineatus GN=... [more]
RL17_IXOSC1.912e-2663.5460S ribosomal protein L17 OS=Ixodes scapularis GN=... [more]
RL17_PHLPP3.261e-2659.3860S ribosomal protein L17 OS=Phlebotomus papatasi ... [more]
RL17_DROPS5.562e-2660.4260S ribosomal protein L17 OS=Drosophila pseudoobsc... [more]
RL17_DROYA7.265e-2660.4260S ribosomal protein L17 OS=Drosophila yakuba GN=... [more]
RL17_DROME7.265e-2660.4260S ribosomal protein L17 OS=Drosophila melanogast... [more]
RL17_DICDI9.488e-2662.3760S ribosomal protein L17 OS=Dictyostelium discoid... [more]
RL17_DIACI1.239e-2561.4660S ribosomal protein L17 OS=Diaphorina citri GN=R... [more]
RL17_CARGR3.605e-2558.3360S ribosomal protein L17 OS=Carabus granulatus GN... [more]
RL17_MACHI6.150e-2557.2960S ribosomal protein L17 OS=Maconellicoccus hirsu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834601 ID=CF834601; Name=CF834601; organism=Citrus sinensis; type=EST; length=712bp
TTTTGAGTTTTCAATACGGTTCAGTCGAAGCCAGCAGAAATCTTTTGCCT
TCCTGATTTGAAGATTATGGGAACTCCTTGCGCAGGTTATACCGATTGGT
CGGAGGGTGGGGCCCCCCCATGGTTTTCACTTATTGCTGATGATGAAATT
AATGGAAATATTGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGA
TCACACTGGTTAAGAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGA
AAATAAAAGTATGGGTACTGTTATTACCCGTCAATTGTACGATGGTCTCA
GTTTGGTTCAGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCT
CTTTGTCTAGCTATTAAAAAAAGGAAAGCAAACCCACTTCACTGATACAG
AGGCAGCATCCAAAATCAGCCACCATGGTGAAGTACTCAAAAGAGCCTGA
CAATCCTACCAAGTCCTGCAAAGCCAGGGGCTCTGATCTCAGGGTTCATT
TTAAGAACACGAGAGAAACTGCCCATGCCATCAGGAAATTGCCTTTGACG
AAGGCTAAGAGGTATTTGGAGGATGTTATGGCCCATAAACAGGCCATTCC
CTTCACACGATTCTGCGGTGGTGTTGGACGTACTGCTCANGCAAAGAATA
GGCATCCAAATGGACAGGGACGATGGCCTGTCAAATCAGCAAAGTTCATT
CTTGACTTGCTC
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