CF834610

Overview
NameCF834610
Unique NameCF834610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.346e-13
Identity = 40/102 (39.22%), Postives = 54/102 (52.94%), Query Frame = -1
Query:  328 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 633
            +K ET SYLP ++ + +  ++  +I  GW P +E            H  P      YW MWKLPM+G TDA  VL EV    K  P++ VR+IG+DN  Q Q
Sbjct:   17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQ 106          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = -1
Query:  313 LKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 636
            LKK+ET SYLP ++ E + ++I   I  GW P +E   EKG     P K+       YW MWKLP++G      V+ E+    +E+P   VR + +DN  Q Q ++F+
Sbjct:    9 LKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKG----TPAKAS------YWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFV 105          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 37/114 (32.46%), Postives = 57/114 (50.00%), Query Frame = -1
Query:  292 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 633
            +K  T SYLPP+ +  + +++  ++++GW P +E            H  P      YW MWKLPM+G TD   +L E+    +  P   VR+IG+DN  Q Q  + I  +   V
Sbjct:   17 RKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQGANMIVYRGTAV 118          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 37/106 (34.91%), Postives = 53/106 (50.00%), Query Frame = -1
Query:  313 KFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 630
            K+ET SYLP +  E + ++I  LI  GW P +E            H  P      YW MWKLPM+G      V+ E+    + +P   VR++G+DN  Q Q  +F+
Sbjct:   12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFV 105          
The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS1_HYDMR3.346e-1339.22Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_NITVU4.370e-1337.04Ribulose bisphosphate carboxylase small chain OS=N... [more]
RBS_RHOCA6.310e-1232.46Ribulose bisphosphate carboxylase small chain OS=R... [more]
RBS1_THIFE8.241e-1234.91Ribulose bisphosphate carboxylase small chain 1 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTACTCTTTTAATTCCAGTAATTCTCACTCTTTAAACTGAACATC
CGAGACCCAGATTAGTGAAACTGACAACAAAGGATTCGATTATTAAAATA
TATATAAAAAAAAAAAAAAGAAGCCAATGTCGGGGAGAAAACCAAAAAAG
TTTGAGCAGCAGCAACAGCAGCCTAAGTACAAATTAAACGCAAACCGAAC
CCCCATTGATCGAATGATCATTATGGGGGTTACACATAATAATAATCAAC
AATATTGCATGGGTGGTTACACAAATTTAATTGGGAACCTAGACGCCTGG
TGGCTTGGCAGCAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAA
ATCCGATAATTCGGACGAATGAATGGGGGTATTCCTTCTGGACCTCCCCA
ACCTCCTTCAAAACCTGGGGTGCATCTGTGCACCCATACATGGGCAGCTT
CCACATTGTCCAGTACCGTCCATCGTATTATCCTGGGGACTTGTGGGGCT
CACGGTACACCCATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAG
CCGGAGCGGATAAGGGAATTGATTTCCTTGAGCAAAGCTTCATCGGACAG
TGGCGGGAGGTATGAGAGAGTCTCGAACTTCTTCAAGACAGTTGGTGGCC
ACACCTTCATGCATTGGACTCTTCCGCCGTTGCTTGCAATGGAAGAAATG
TCATTGTTGGACTTCTTGGTTGCTGGGAAAGC
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