CF834610
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.533e-58 Identity = 105/144 (72.92%), Postives = 121/144 (84.03%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 AFPAT+K+NND+S++ SNGGRV CM+VWPP LKKFETLSYLPPLS E L KE++ L+R+ W+PC+EF E G+VYRE H SPG YDGRYWTMWKLPM+GCTDA QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 34 AFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.533e-58 Identity = 105/144 (72.92%), Postives = 121/144 (84.03%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 AFPAT+K+NND+S++ SNGGRV CM+VWPP LKKFETLSYLPPLS E L KE++ L+R+ W+PC+EF E G+VYRE H SPG YDGRYWTMWKLPM+GCTDA QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 34 AFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.533e-58 Identity = 104/146 (71.23%), Postives = 121/146 (82.88%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 +FP ++K N DI+SIASNGGRVQCM+VWPP KK+ETLSYLP L+DE LLKEI L+ GW+PCLEFE E G+VYRE H SP YDGRYWTMWKLPM+GCTDA QVL E+ E +K YP++++RIIGFDN RQVQCISFIA KPPG Sbjct: 34 SFPVSRKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2) HSP 1 Score: 226.098 bits (575), Expect = 1.533e-58 Identity = 103/145 (71.03%), Postives = 122/145 (84.14%), Query Frame = -1 Query: 298 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 732 AFP T+K+NNDI+SI SNGGRV CMKVWPP KKFETLSYLP L++ L KE++ L+R+ WIPC+EFELE G+VYRE +PG YDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISFIA KPP Sbjct: 32 AFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 2.615e-58 Identity = 103/146 (70.55%), Postives = 121/146 (82.88%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 +FP ++K N DI+SIASNGGRVQCM+VWPP KK+ETLSYLP LS E LL E+ L+++GW+PCLEFE E G+VYRE +KSPG YDGRYWTMWKLPM+GCTDA QVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G Sbjct: 34 SFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 2.615e-58 Identity = 105/144 (72.92%), Postives = 119/144 (82.64%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 +FP T+KSN DI+SIASNGGRVQCM+VWPP KKFETLSYLPPLSD LL ++ L+ GWIPC+EFELE +VYRE H+SPG DGRYWTMWKLPMYGCTD QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP Sbjct: 38 SFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 2.615e-58 Identity = 104/146 (71.23%), Postives = 120/146 (82.19%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 +FP + K N DI+SIASNGGRVQCM+VWPP KK+ETLSYLP L+DE LLKEI L+ GW+PCLEFE E G+VYRE H SP YDGRYWTMWKLPM+GCTDA QVL E+ E +K YP++++RIIGFDN RQVQCISFIA KPPG Sbjct: 34 SFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 2.615e-58 Identity = 103/146 (70.55%), Postives = 121/146 (82.88%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 +FP ++K N DI+SIASNGGRVQCM+VWPP KK+ETLSYLP LS E LL E+ L+++GW+PCLEFE E G+VYRE +KSPG YDGRYWTMWKLPM+GCTDA QVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G Sbjct: 34 SFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 2.615e-58 Identity = 103/147 (70.07%), Postives = 123/147 (83.67%), Query Frame = -1 Query: 295 AFPATKKSNN-DISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 +FP TKK+NN DI+S+ASNGGRV+CM+VWPP +KK+ETLSYLP LSDE LLKE+ L+++GW+PCLEFE E G+VYRE + SPG YDGRYWTMWKLPM+GCTD QVL EV E + YP +++RIIGFDN RQVQCISFIA KP G Sbjct: 34 SFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58 Identity = 103/145 (71.03%), Postives = 119/145 (82.07%), Query Frame = -1 Query: 295 FPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 729 FP T+K+N+DI+SI SNGG+VQCMKVWP +KKFETLSYLPPL+ E L E+ L+RSGWIPCLEFELE G VYRE + PG YDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P + RIIGFDN RQVQCISF+A KPPG Sbjct: 37 FPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181 The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bpback to top |