CF834610

Overview
NameCF834610
Unique NameCF834610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.533e-58
Identity = 105/144 (72.92%), Postives = 121/144 (84.03%), Query Frame = -1
Query:  301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732
            AFPAT+K+NND+S++ SNGGRV CM+VWPP  LKKFETLSYLPPLS E L KE++ L+R+ W+PC+EF  E G+VYRE H SPG YDGRYWTMWKLPM+GCTDA QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:   34 AFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.533e-58
Identity = 105/144 (72.92%), Postives = 121/144 (84.03%), Query Frame = -1
Query:  301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732
            AFPAT+K+NND+S++ SNGGRV CM+VWPP  LKKFETLSYLPPLS E L KE++ L+R+ W+PC+EF  E G+VYRE H SPG YDGRYWTMWKLPM+GCTDA QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:   34 AFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.533e-58
Identity = 104/146 (71.23%), Postives = 121/146 (82.88%), Query Frame = -1
Query:  295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732
            +FP ++K N DI+SIASNGGRVQCM+VWPP   KK+ETLSYLP L+DE LLKEI  L+  GW+PCLEFE E G+VYRE H SP  YDGRYWTMWKLPM+GCTDA QVL E+ E +K YP++++RIIGFDN RQVQCISFIA KPPG
Sbjct:   34 SFPVSRKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.533e-58
Identity = 103/145 (71.03%), Postives = 122/145 (84.14%), Query Frame = -1
Query:  298 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 732
            AFP T+K+NNDI+SI SNGGRV CMKVWPP   KKFETLSYLP L++  L KE++ L+R+ WIPC+EFELE G+VYRE   +PG YDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:   32 AFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.615e-58
Identity = 103/146 (70.55%), Postives = 121/146 (82.88%), Query Frame = -1
Query:  295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732
            +FP ++K N DI+SIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+  L+++GW+PCLEFE E G+VYRE +KSPG YDGRYWTMWKLPM+GCTDA QVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   34 SFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.615e-58
Identity = 105/144 (72.92%), Postives = 119/144 (82.64%), Query Frame = -1
Query:  301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732
            +FP T+KSN DI+SIASNGGRVQCM+VWPP   KKFETLSYLPPLSD  LL ++  L+  GWIPC+EFELE  +VYRE H+SPG  DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP
Sbjct:   38 SFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.615e-58
Identity = 104/146 (71.23%), Postives = 120/146 (82.19%), Query Frame = -1
Query:  295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732
            +FP + K N DI+SIASNGGRVQCM+VWPP   KK+ETLSYLP L+DE LLKEI  L+  GW+PCLEFE E G+VYRE H SP  YDGRYWTMWKLPM+GCTDA QVL E+ E +K YP++++RIIGFDN RQVQCISFIA KPPG
Sbjct:   34 SFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.615e-58
Identity = 103/146 (70.55%), Postives = 121/146 (82.88%), Query Frame = -1
Query:  295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732
            +FP ++K N DI+SIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+  L+++GW+PCLEFE E G+VYRE +KSPG YDGRYWTMWKLPM+GCTDA QVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   34 SFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.615e-58
Identity = 103/147 (70.07%), Postives = 123/147 (83.67%), Query Frame = -1
Query:  295 AFPATKKSNN-DISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732
            +FP TKK+NN DI+S+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+  L+++GW+PCLEFE E G+VYRE + SPG YDGRYWTMWKLPM+GCTD  QVL EV E +  YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   34 SFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58
Identity = 103/145 (71.03%), Postives = 119/145 (82.07%), Query Frame = -1
Query:  295 FPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 729
            FP T+K+N+DI+SI SNGG+VQCMKVWP   +KKFETLSYLPPL+ E L  E+  L+RSGWIPCLEFELE G VYRE  + PG YDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  + RIIGFDN RQVQCISF+A KPPG
Sbjct:   37 FPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS6_LEMGI1.533e-5872.92Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI1.533e-5872.92Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS2_PETHY1.533e-5871.23Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_BRANA1.533e-5871.03Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_TOBAC2.615e-5870.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_AMAHP2.615e-5872.92Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_PETHY2.615e-5871.23Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS1_NICSY2.615e-5870.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS0_SOLTU2.615e-5870.07Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS_MANES3.415e-5871.03Ribulose bisphosphate carboxylase small chain, chl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05N04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTACTCTTTTAATTCCAGTAATTCTCACTCTTTAAACTGAACATC
CGAGACCCAGATTAGTGAAACTGACAACAAAGGATTCGATTATTAAAATA
TATATAAAAAAAAAAAAAAGAAGCCAATGTCGGGGAGAAAACCAAAAAAG
TTTGAGCAGCAGCAACAGCAGCCTAAGTACAAATTAAACGCAAACCGAAC
CCCCATTGATCGAATGATCATTATGGGGGTTACACATAATAATAATCAAC
AATATTGCATGGGTGGTTACACAAATTTAATTGGGAACCTAGACGCCTGG
TGGCTTGGCAGCAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAA
ATCCGATAATTCGGACGAATGAATGGGGGTATTCCTTCTGGACCTCCCCA
ACCTCCTTCAAAACCTGGGGTGCATCTGTGCACCCATACATGGGCAGCTT
CCACATTGTCCAGTACCGTCCATCGTATTATCCTGGGGACTTGTGGGGCT
CACGGTACACCCATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAG
CCGGAGCGGATAAGGGAATTGATTTCCTTGAGCAAAGCTTCATCGGACAG
TGGCGGGAGGTATGAGAGAGTCTCGAACTTCTTCAAGACAGTTGGTGGCC
ACACCTTCATGCATTGGACTCTTCCGCCGTTGCTTGCAATGGAAGAAATG
TCATTGTTGGACTTCTTGGTTGCTGGGAAAGC
back to top