CF834649

Overview
NameCF834649
Unique NameCF834649
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834649 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 8.077e-28
Identity = 72/197 (36.55%), Postives = 98/197 (49.75%), Query Frame = -1
Query:  149 GFGNSGNETMRKREIAAFFAQTGHETIGGWTDAPGGEYAWGY-CYIRQVSPASSDXXXXXXXXP--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDVLAIDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 727
            GF N       KREIAAFFA   HET              G+ CYI +++ A+ D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  124 GFANDRTNDDSKREIAAFFAHVTHET--------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CF834649 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.874e-26
Identity = 65/195 (33.33%), Postives = 97/195 (49.74%), Query Frame = -1
Query:  149 GFGNSGNETMRKREIAAFFAQTGHETIGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDVLAIDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 727
            GF + G++   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG      +  R+G++  +C + G+ PG NL C
Sbjct:  109 GFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CF834649 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 68/196 (34.69%), Postives = 93/196 (47.45%), Query Frame = -1
Query:  149 FGNSGNETMRKREIAAFFAQTGHETIGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDVLAIDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 724
            FG  G+E   KREIAA FA   HET               +CYI ++  AS D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:  109 FGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CF834649 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 66/195 (33.85%), Postives = 100/195 (51.28%), Query Frame = -1
Query:  149 FGNSGNETMRKREIAAFFAQTGHETIGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXP--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDVLAIDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 724
            F N  N   R REIA  FA   HET               +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L ++LL  P++++ +P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  110 FPNFANSVTR-REIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CF834649 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.176e-24
Identity = 63/195 (32.31%), Postives = 95/195 (48.72%), Query Frame = -1
Query:  149 GFGNSGNETMRKREIAAFFAQTGHETIGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDVLAIDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 727
            GF + G E   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC       +  R+G++  +C +  + PG NL C
Sbjct:  120 GFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CF834649 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = -1
Query:  245 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 382
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CF834649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ8.077e-2836.55Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE9.874e-2633.33Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU1.092e-2434.69Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_BRANA1.862e-2433.85Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIA_MAIZE3.176e-2432.31Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ARAHY1.808e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834649 ID=CF834649; Name=CF834649; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTAGTTGTCCCCTACAAGTGTGACATCTACCGCCTTT
ATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACCCTGATCATGATGA
TCACATAGATTGTGCCATCAGATTAAGGCCATAAGGCCGTTGGTTGGAGC
AATCAAGATTGTCACCAGGCTGAATCCCAAACTTGCCACAGAAAGTGGTA
AAGAACCCAATACGGTTACGTACAGCGTCATTCCCAACGTAGCCACATTC
AATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCGGAAGCCGGC
CGGCGTTTACGTCATTTGCTGATGGTTTCCATTCGTCGATAATGACTTCG
TGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCAGATTGCTGA
CTTGAATGATAGTACTGGATCAATGGCAAGTACGTCTGGATTGTTCAACA
AGTCCACCCCCAAGGCTTCTCCGCACCTTAAGTAATTGCAATTCCAAGTG
AGTTGAATTGGACCTCGGCCATAGTATTGCCCTGGCAAGGGACATGGACA
GTAAGGATAACAGTAGTCGGACGACGCAGGGCTAACTTGCCTAATATAGC
AATATCCCCAAGCATATTCTCCACCAGGTGCATCGGTCCATCCCCCAATA
GTTTCATGGCCAGTTTGGGCAAAAAAGGCAGCAATTTCTCTTTTACGCAT
GGTTTCATTTCCAGAGTTACCAAAGCC
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