CF834676

Overview
NameCF834676
Unique NameCF834676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11296 contig Csv1_Contig11296:510..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834676 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 60/183 (32.79%), Postives = 86/183 (46.99%), Query Frame = -1 
Query:  197 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERPLKVKAKKNVIEMPGN--GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 739
            Y  TK  GE++ H Y   +G+ I  LRFFTVYGP  RPDMA+    +  LQ KP+T++        +RDFTYI D VKG    L                      N+G     +V K+V+++E    +  +K  +       G+   T A+IS A++   Y P T L+ GL   + +  S Y
Sbjct:  149 YGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGPRQRPDMAFHRLIKQHLQQKPLTIFGDGQQ---SRDFTYISDCVKGITAVLGKPHLIG------------ETVNIGGAERASVLKVVSLIE---DISGRKATLHFSDKIAGEPSNTWADISKAKQLLHYDPATSLKDGLTNEIAYLSSLY 313
The following BLAST results are available for this feature:
BLAST of CF834676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YTCB_BACSU2.056e-1832.79Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834676 ID=CF834676; Name=CF834676; organism=Citrus sinensis; type=EST; length=739bp
TTTTTTTTTTTTTTTTCACCTTACAACGTTTTCTGTTCCTTTCGTCTTTT
TTAAGGAAAAAAACAAAAAAAAAAAACCCTCTAATCCCGCACCTCCCACG
GCGCGAAAACCCAAAAAAAAAAGAAAAAAAGAAGGTAAAACGCAAAAAAC
ATAAAGGAAAAAAAAATTAATTTACACGTTTGCCACGATTATAGCCGTAA
TATGAGAGATACCATCTAACAAATTTTTTCAAGCCGGTTTGCAAATCCGT
CGTGGGCCTGTACCCGAACTCCTTCTGGGCCGAACTGATATTCGCATGCG
TGAACGGGACGTCGCCGTTTCCAGGCATTTCGATTACATTCTTCTTGGCT
TTTACCTTCAGGGGTCTCTCCAATATATTCACCAGCTTAGGTACCGTGAC
CGGTGACGTGTTCCCCAAATTAAAGATCCGGTACGGTGCTGGGCCCCGCT
TCTTTCCGCCCGACCCGGTACTCTTACCCGAGGTATCCAGCGAACCTAAA
CAACCCTTCACGATATCGTCAATGTAAGTAAAATCTCGTGCCAAGTCGAC
GTGATTCTTCCCACGATAAACCGTGATTGGTTTGCCTTGGAGAATATTTC
TCGTGAACGAGAAGTAAGCCATATCGGGTCGGCCCCAGGGTCCGTACACG
GTGAAAAACCTCAGCCCGGTAATTGAGAGGCCGTAAATGTGATTGTAGGT
GTGAGCAATTTCTTCACCGGCCTTTTTGGTAGCCGCGTA
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