CF834681

Overview
NameCF834681
Unique NameCF834681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:81..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834681 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.972e-45
Identity = 87/145 (60.00%), Postives = 109/145 (75.17%), Query Frame = -1
Query:  176 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPW 607
            E++FI IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  AE+HY     +PFFG L+++ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDLAI  GRN+IHGSD+ E+A+ EI LWF P    +W  S   W
Sbjct:    4 ERSFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFGGLVDFITSGPVVAMVWEGDGVITSARKMIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAEFEIGLWFNPSELSDWTPSDQTW 148          
BLAST of CF834681 vs. ExPASy Swiss-Prot
Match: NDK_SYNPX (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH8102) GN=ndk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.972e-45
Identity = 86/145 (59.31%), Postives = 108/145 (74.48%), Query Frame = -1
Query:  176 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPW 607
            E+TFI IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  AE+HY     +PFF  L+++ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD+ E+A+ EI LWF    +N W  S   W
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDAPETAEFEIGLWFDAAELNDWTPSDQTW 147          
BLAST of CF834681 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.360e-44
Identity = 86/145 (59.31%), Postives = 108/145 (74.48%), Query Frame = -1
Query:  176 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 607
            E+TFI IKPDGVQRGL+GEI+ RFE+KGF L GLK +T  R  AE+HY     +PFF  L+++ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDLAI  GRN+IHGSD+ E+AQ EI LWF    + +W  S   W
Sbjct:    4 ERTFIAIKPDGVQRGLIGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAQFEIGLWFQASELSDWTPSDQGW 148          
BLAST of CF834681 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.360e-44
Identity = 82/149 (55.03%), Postives = 113/149 (75.84%), Query Frame = -1
Query:  167 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWI*E 610
            ME+TF+M+KPDGVQRGLVGE+I R E+KG  +  +K++ + R  AE HY +   KPFF +L++YITSGPVVAM+ EG+  +K  RT++GATNPA++APGTIRGD  +  GRN++H SDS +SA++EI+L+F D  I NW+ +   WI E
Sbjct:    1 MERTFVMVKPDGVQRGLVGEVIGRLERKGLKIVAMKMLWIAREMAENHYAEHREKPFFSALVDYITSGPVVAMVVEGKNAIKVVRTLVGATNPAEAAPGTIRGDFGLDVGRNVVHASDSPQSAEREISLFFSDDEIVNWEKADEDWIYE 149          
BLAST of CF834681 vs. ExPASy Swiss-Prot
Match: NDK_SYNJA (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndk PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.776e-44
Identity = 84/149 (56.38%), Postives = 107/149 (71.81%), Query Frame = -1
Query:  167 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWI*E 610
            ME+TFI IKPDGVQRGLVG II R E +G+ L GLKL+ V +  AE HY +   +PFF  L+++ITSGPVVAM+W+G+GV+   R +IG TNP  + PGTIRGD  I  GRN++HGSD  E+AQ+EIALWF +   +NW  +   WI E
Sbjct:    1 MERTFIAIKPDGVQRGLVGSIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHRERPFFPGLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLDAEPGTIRGDFGIDIGRNLVHGSDGPETAQREIALWFQESELVNWTPATQSWIYE 149          
BLAST of CF834681 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.776e-44
Identity = 84/148 (56.76%), Postives = 109/148 (73.65%), Query Frame = -1
Query:  167 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI*E 607
            E+TF+ +KPDGVQR LVGEI+ RFE+KGF L  LKL+        +HY +L  +PF+G L++Y+ SGPVVAM+W+G  VV+T R +IGATNPA + PGTIRGD  I  G+N+IHGSDSVESA++EIALWF  D  + W+ S   W+ E
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169          
BLAST of CF834681 vs. ExPASy Swiss-Prot
Match: NDK_BACC1 (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 10987) GN=ndk PE=3 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.320e-44
Identity = 81/147 (55.10%), Postives = 111/147 (75.51%), Query Frame = -1
Query:  173 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWI 610
            ME+TF+M+KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EIA++F +   +++   ++ WI
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIAIFFKEEELVDYSKLMNEWI 147          
BLAST of CF834681 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.029e-44
Identity = 82/147 (55.78%), Postives = 110/147 (74.83%), Query Frame = -1
Query:  173 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWI 610
            ME+T++MIKPDGVQR L+GEI+ RFEKKGF+L G KLMTV +  AE HY +   +PFFG L+++ITSGPV AM+WEGE V+ T R ++GATNPA + PGTIRGD  +    N+IHGSDS ESA++EI ++F    +N +   ++ W+
Sbjct:    1 MERTYLMIKPDGVQRNLIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADAEPGTIRGDFGVQVAMNVIHGSDSPESAKREIDIFFDSSELNEYDKVVNRWV 147          
BLAST of CF834681 vs. ExPASy Swiss-Prot
Match: NDK_BACCR (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ndk PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.029e-44
Identity = 81/147 (55.10%), Postives = 110/147 (74.83%), Query Frame = -1
Query:  173 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWI 610
            ME+TF+M+KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY +   KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EIA++F +   +++   ++ WI
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHKEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIAIFFKEEELVDYSKLMNEWI 147          
BLAST of CF834681 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 3.957e-44
Identity = 83/147 (56.46%), Postives = 110/147 (74.83%), Query Frame = -1
Query:  173 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWI 610
            ME+TFIM+KPDGVQR L+G+I+ RFE+KG  L G KLM V    AEKHY +   KPFFG L+E+ITSGPV AM+WEGE V++  R +IG TNP ++ PGTIRGD  +  G+NIIHGSDS+ESA++EI ++F +   +++Q  +  WI
Sbjct:    2 MEKTFIMVKPDGVQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELVEFITSGPVFAMVWEGENVIEVTRQLIGKTNPKEALPGTIRGDYGMFVGKNIIHGSDSLESAEREINIFFKNEELVSYQQLMAGWI 148          
The following BLAST results are available for this feature:
BLAST of CF834681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SYNS37.972e-4560.00Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNPX7.972e-4559.31Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNPW1.360e-4459.31Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_ARCFU1.360e-4455.03Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]
NDK_SYNJA1.776e-4456.38Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK3_HUMAN1.776e-4456.76Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]
NDK_BACC12.320e-4455.10Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACHD3.029e-4455.78Nucleoside diphosphate kinase OS=Bacillus halodura... [more]
NDK_BACCR3.029e-4455.10Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACSU3.957e-4456.46Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834681 ID=CF834681; Name=CF834681; organism=Citrus sinensis; type=EST; length=661bp
CCTTTTTTTTTGAAGCAGCCAACATAACCAGGATTGGTCTCAATTTAACT
CAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGAAAT
AGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCCTCA
ACCAAACATTAGTTTACTCCTAGATCCAAGGGTGAAGGCTGCTCTGCCAG
TTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACTCTC
AACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCAAAT
CACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCAATA
ATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGCAAC
AACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCTTCG
ATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTCATA
AGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGATGAT
TTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGATCATGATGAAAG
TTTGTTCCATTTCTTTGAGATTCAGAGAAACCAACTTGTTTTGAGAATTG
AGTGAAATAGC
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