CF834682

Overview
NameCF834682
Unique NameCF834682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAS1 (Nucleoside diphosphate kinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=ndk PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.230e-42
Identity = 87/149 (58.39%), Postives = 104/149 (69.80%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GEII R E+KG  L G K MTV +  AE+HY + + KPF+  LI +ITS PV AM+ EGE  V   R IIG TNP+++ PGTIRGDL +  GRNIIHGSDSVESA KEI LWF  D    +  S   W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIERKGLKLVGGKFMTVPQSLAEEHYAEHTDKPFYKHLISFITSAPVFAMVVEGEDAVHVARHIIGKTNPSEATPGTIRGDLGLTVGRNIIHGSDSVESANKEINLWFKADELSEYSESRESWLYE 149          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAES (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ndk PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.607e-42
Identity = 85/149 (57.05%), Postives = 103/149 (69.13%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GEII R EKKG  L G K M V    AEKHY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP+++APGTIRGD  +  GRNIIHGSDS ESAQ+E+ LWF    I +++     W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIEKKGLKLVGGKFMQVPMELAEKHYSEHEGKPFYDKLISFITSAPVFAMVVEGENAVAVSRKIIGSTNPSEAAPGTIRGDYGLNLGRNIIHGSDSTESAQREVKLWFTSSEIADYKEPREDWLYE 149          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAEQ (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ndk PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.607e-42
Identity = 85/149 (57.05%), Postives = 103/149 (69.13%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GEII R EKKG  L G K M V    AEKHY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP+++APGTIRGD  +  GRNIIHGSDS ESAQ+E+ LWF    I +++     W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIEKKGLKLVGGKFMQVPMELAEKHYSEHEGKPFYDKLISFITSAPVFAMVVEGENAVAVSRKIIGSTNPSEAAPGTIRGDYGLNLGRNIIHGSDSTESAQREVKLWFTSSEIADYKEPREDWLYE 149          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PELTS (Nucleoside diphosphate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ndk PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.099e-42
Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 496
            ME+T++MIKPDGVQRGLVGEII RFEK+GF + GLK++ + R  AEKHY +   KPFF  L+ YITS PVVAM+ EG+  V   R ++GAT+P ++APGTIRG   I  GRN+IHGSDS  SAQ+EIAL+F  D  + +   L  W+YE
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIIARFEKRGFKIVGLKMIRIGRELAEKHYGEHKGKPFFEPLVGYITSSPVVAMVIEGKNAVGAAREMMGATDPLKAAPGTIRGTYGIDIGRNVIHGSDSPASAQREIALFFSADELMEYGLELDRWVYE 149          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PROM2 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=ndk PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.741e-42
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 2
Query:   56 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 487
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLAI  GRNIIHGSD  ++A+ EI LWF +  +  W++S   W
Sbjct:    4 ERTFIAIKPDGVQRGYVAEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEIDLWFNEEELCEWETSDAKW 148          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PROMS (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.580e-42
Identity = 83/145 (57.24%), Postives = 106/145 (73.10%), Query Frame = 2
Query:   56 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 487
            E+TFI IKPDGVQRG V EI+ RFEKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLAI  GRNIIHGSD  ++A+ EI LWF +  +  W++S   W
Sbjct:    4 ERTFIAIKPDGVQRGYVSEILGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEINLWFNEEELCEWETSDSKW 148          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_SYMTH (Nucleoside diphosphate kinase OS=Symbiobacterium thermophilum GN=ndk PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.675e-42
Identity = 79/147 (53.74%), Postives = 103/147 (70.07%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIY 493
            ME++F+M+KPDGVQRGL+GE+I R E++G  L   KLM V R  AE+HY  L  KPFF SLIE+ITSGPV+AM+WEG   +   R  +GATNPA + PGTIR D A     N++HGSD  ESA++EI LWF +   ++  S+  WI+
Sbjct:    1 MERSFVMVKPDGVQRGLIGEVISRLERRGLKLVAAKLMRVSRELAEEHYAQLKDKPFFPSLIEFITSGPVMAMVWEGPNAISIIRKTMGATNPANAEPGTIRADFACDVSYNVVHGSDGPESAEREIRLWFGEVEPSYSRSVDRWIF 147          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PROM9 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=ndk PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.675e-42
Identity = 84/145 (57.93%), Postives = 105/145 (72.41%), Query Frame = 2
Query:   56 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 487
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ HY     +PFFG L+++I+SGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLAI  GRNIIHGSD  ++A+ EI LWF +  +  W +S   W
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEIDLWFNEEELCEWYTSDSKW 148          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAAU (Nucleoside diphosphate kinase OS=Staphylococcus aureus GN=ndk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAAT (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ndk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
The following BLAST results are available for this feature:
BLAST of CF834682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAS11.230e-4258.39Nucleoside diphosphate kinase OS=Staphylococcus sa... [more]
NDK_STAES1.607e-4257.05Nucleoside diphosphate kinase OS=Staphylococcus ep... [more]
NDK_STAEQ1.607e-4257.05Nucleoside diphosphate kinase OS=Staphylococcus ep... [more]
NDK_PELTS2.099e-4257.72Nucleoside diphosphate kinase OS=Pelotomaculum the... [more]
NDK_PROM22.741e-4257.93Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMS3.580e-4257.24Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYMTH4.675e-4253.74Nucleoside diphosphate kinase OS=Symbiobacterium t... [more]
NDK_PROM94.675e-4257.93Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_STAAU7.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAT7.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834682 ID=CF834682; Name=CF834682; organism=Citrus sinensis; type=EST; length=648bp
TGCTATTTCACTCTTTTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAG
AAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGC
CTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAA
GGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATG
AGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACC
TCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGAC
TGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAA
CCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGA
AGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGA
TGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAA
CTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCT
ATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGT
TATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGC
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