CF834682

Overview
NameCF834682
Unique NameCF834682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAAR (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MRSA252) GN=ndk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAAN (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain N315) GN=ndk PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAAM (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ndk PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAAE (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Newman) GN=ndk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAAC (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain COL) GN=ndk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAAB (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAA9 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH9) GN=ndk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAA8 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=ndk PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAA3 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300) GN=ndk PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_STAA2 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH1) GN=ndk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 83/149 (55.70%), Postives = 106/149 (71.14%), Query Frame = 2 
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
The following BLAST results are available for this feature:
BLAST of CF834682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAAR7.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAN7.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAM7.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAE7.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAC7.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAB7.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA97.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA87.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA37.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA27.975e-4255.70Nucleoside diphosphate kinase OS=Staphylococcus au... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834682 ID=CF834682; Name=CF834682; organism=Citrus sinensis; type=EST; length=648bp
TGCTATTTCACTCTTTTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAG
AAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGC
CTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAA
GGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATG
AGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACC
TCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGAC
TGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAA
CCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGA
AGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGA
TGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAA
CTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCT
ATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGT
TATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGC
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