CF834682

Overview
NameCF834682
Unique NameCF834682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_LISIN (Nucleoside diphosphate kinase OS=Listeria innocua GN=ndk PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.169e-41
Identity = 80/147 (54.42%), Postives = 109/147 (74.15%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 490
            MEQT++M+KPDGV+RGL+GEI+ + EKKG  L   KLM +DR  AE+HY +   KPFF  LI +ITSGPV AM+ EG+ V+KT R ++G TNP ++ PGTIR + AI T RN+IHGSDS ESA++EI L+F P   ++++ ++  WI
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVAKIEKKGIKLVAGKLMQIDRTLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKTARRMMGKTNPLEADPGTIRAEYAIHTNRNVIHGSDSPESAKREIQLFFEPHEILSYEKAVDTWI 147          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_LISMH (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=ndk PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.751e-41
Identity = 80/147 (54.42%), Postives = 107/147 (72.79%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 490
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS+ESA++EI L+F P   +++Q ++  WI
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSLESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_DESHY (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain Y51) GN=ndk PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.152e-40
Identity = 81/149 (54.36%), Postives = 108/149 (72.48%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 496
            ME+TFIM+KPD VQRGLVG+II RFE KG  L G+KLM+VD+  AE+HY +   K FF   ++YI S PVVAM+WEG+ VV   R ++GATNPA + PG+IRG   +   RN+IHGSDSV SA++EIAL+F P+   +++ +   W+ E
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFETKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE 149          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_DESHD (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ndk PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.152e-40
Identity = 81/149 (54.36%), Postives = 108/149 (72.48%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 496
            ME+TFIM+KPD VQRGLVG+II RFE KG  L G+KLM+VD+  AE+HY +   K FF   ++YI S PVVAM+WEG+ VV   R ++GATNPA + PG+IRG   +   RN+IHGSDSV SA++EIAL+F P+   +++ +   W+ E
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFEAKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE 149          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_LISMF (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ndk PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.504e-40
Identity = 80/147 (54.42%), Postives = 106/147 (72.11%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 490
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS ESA++EI L+F P   +++Q ++  WI
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_LISMC (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=ndk PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.964e-40
Identity = 79/147 (53.74%), Postives = 106/147 (72.11%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 490
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D A+ T RN+IHGSDS ESA++EI L+F P   +++Q ++  WI
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAVHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_HALMA (Nucleoside diphosphate kinase OS=Haloarcula marismortui GN=ndk PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.351e-40
Identity = 75/154 (48.70%), Postives = 108/154 (70.13%), Query Frame = 2
Query:   44 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESA--QKEIALWFPDGP-INWQSSLHPWIYE 496
            + E E+TF+M+KPDGVQRGL+G+I+ RFE +G  + G K M +D+  AE+HY +   KPFF  L+++ITSGPV AM+WEG+   +  RT++G T+PA+SAPGTIRGD  +  GRN+IHGSD  +    ++EI L+F +   ++W      W+YE
Sbjct:    1 MSEHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGDYGLDLGRNVIHGSDHEDEGANEREIELFFDEAELVDWDQIDSSWLYE 154          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDKM_HUMAN (Nucleoside diphosphate kinase, mitochondrial OS=Homo sapiens GN=NME4 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.351e-40
Identity = 77/149 (51.68%), Postives = 107/149 (71.81%), Query Frame = 2
Query:   56 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INW-----QSSLHP 484
            E+T + +KPDGVQR LVG++I RFE++GF+L G+K++        +HY+DL  KPF+ +LI Y++SGPVVAM+WEG  VV+  R +IG T+ A++APGTIRGD ++   RN+IH SDSVE AQ+EI LWF     ++W      SS+HP
Sbjct:   38 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHP 186          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_UNCMA (Nucleoside diphosphate kinase OS=Uncultured methanogenic archaeon RC-I GN=ndk PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 77/150 (51.33%), Postives = 108/150 (72.00%), Query Frame = 2
Query:   50 EMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSL-HPWIYE 496
            E E+TF+M+KPDGVQRGLVGEII RFE++G  + G+K++ V    A++HY + ++KPFF  L+ +I SGP VAM+ EG+  V   R+++G T P +SAPGTIRGD A+  GRN+IH SDS ESA++EI+L+F    I   + +   W+YE
Sbjct:    3 ERERTFVMVKPDGVQRGLVGEIISRFERRGLKIVGMKMLEVSEELAKQHYAEHAAKPFFPGLVSFIRSGPTVAMVIEGKDAVSMVRSMLGKTKPIESAPGTIRGDFALDMGRNVIHASDSPESAKREISLYFKTSEIATYARIDEQWLYE 152          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_NATPD (Nucleoside diphosphate kinase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=ndk PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 78/153 (50.98%), Postives = 108/153 (70.59%), Query Frame = 2
Query:   44 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE-SAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            + + E+TF+M+KPDGVQRGL+G+I+ RFE +G  L   K M +D   A +HY +   KPFF  L E+ITSGPV AM+WEG+  V   RT++G T+PA+SAPGTIRGD  +  GRN+IHGSD+   SA++EI L+F D  + +++    PW+YE
Sbjct:    1 MADTERTFVMVKPDGVQRGLIGDIVSRFEDRGLKLVAGKFMQIDDELAREHYAEHVDKPFFDELKEFITSGPVFAMVWEGQDAVAQVRTMMGETDPAESAPGTIRGDFGLDLGRNVIHGSDTEPGSAEREIGLFFDDDELQDYERIDEPWLYE 153          
The following BLAST results are available for this feature:
BLAST of CF834682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_LISIN5.169e-4154.42Nucleoside diphosphate kinase OS=Listeria innocua ... [more]
NDK_LISMH6.751e-4154.42Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_DESHY1.152e-4054.36Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_DESHD1.152e-4054.36Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_LISMF1.504e-4054.42Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_LISMC1.964e-4053.74Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_HALMA3.351e-4048.70Nucleoside diphosphate kinase OS=Haloarcula marism... [more]
NDKM_HUMAN3.351e-4051.68Nucleoside diphosphate kinase, mitochondrial OS=Ho... [more]
NDK_UNCMA1.273e-3951.33Nucleoside diphosphate kinase OS=Uncultured methan... [more]
NDK_NATPD1.273e-3950.98Nucleoside diphosphate kinase OS=Natronomonas phar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834682 ID=CF834682; Name=CF834682; organism=Citrus sinensis; type=EST; length=648bp
TGCTATTTCACTCTTTTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAG
AAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGC
CTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAA
GGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATG
AGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACC
TCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGAC
TGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAA
CCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGA
AGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGA
TGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAA
CTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCT
ATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGT
TATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGC
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