CF834682

Overview
NameCF834682
Unique NameCF834682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_METKA (Nucleoside diphosphate kinase OS=Methanopyrus kandleri GN=ndk PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 81/153 (52.94%), Postives = 108/153 (70.59%), Query Frame = 2
Query:   44 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD--GPINWQSSLHPWIYE 496
            + E+++ F+MIKPDGV RGLVGE+I R E+KG  +  L++  +DR  AEK YE+   KPFF  LIEY+TSGPVV MI EG   VK  R IIGAT+PA++APGT+RGD A+  GRN++H SDS ESA++EI + F      I+++     W+YE
Sbjct:    1 MAEVQREFVMIKPDGVVRGLVGEVIRRLERKGLKIVALEMRQLDRETAEKLYEEHRDKPFFEDLIEYVTSGPVVVMIVEGRKAVKVVRNIIGATDPAEAAPGTVRGDFALDIGRNVVHASDSPESAEREIEIVFGKDLSTIDYERCDEEWLYE 153          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK8_HUMAN (Putative nucleoside diphosphate kinase OS=Homo sapiens GN=NME2P1 PE=5 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 78/137 (56.93%), Postives = 101/137 (73.72%), Query Frame = 2
Query:   89 VQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 496
            +Q GLVG+II RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+L F P+  ++++S  H W+YE
Sbjct:    1 MQCGLVGKIIKRFEQKGFRLVAMKFLPASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLRFKPEELVDYKSCAHDWVYE 137          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_THET8 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ndk PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.663e-39
Identity = 77/131 (58.78%), Postives = 99/131 (75.57%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            ME+TF+MIKPDGV+RGLVGEI+ RFE+KGF +  LKLM + +  AE+HY +   KPFF  L+ +ITSGPVVAM+ EG GVV   R ++GAT+P  + PGTIRGD A     N+IHGS ++E AQ+EIAL+F
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFF 131          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_THET2 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ndk PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.663e-39
Identity = 77/131 (58.78%), Postives = 99/131 (75.57%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            ME+TF+MIKPDGV+RGLVGEI+ RFE+KGF +  LKLM + +  AE+HY +   KPFF  L+ +ITSGPVVAM+ EG GVV   R ++GAT+P  + PGTIRGD A     N+IHGS ++E AQ+EIAL+F
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMRISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFF 131          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_DEIDV (Nucleoside diphosphate kinase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=ndk PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.078e-38
Identity = 75/136 (55.15%), Postives = 98/136 (72.06%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            ME+TF MIKPDGV+RGL  EI+ R  +KG+ + GLK M + R  AE HY +   +PFFG L+++IT GPVVA+  EGE  +   R ++GATNPA +APGTIR D A  TG N+ HGSDS ESAQ+E+AL+F +G +
Sbjct:    1 MERTFAMIKPDGVRRGLTPEILARIARKGYRVVGLKQMVIARETAENHYGEHRERPFFGELVDFITGGPVVAIALEGENAIAGWRAMMGATNPANAAPGTIRADFATTTGENVTHGSDSAESAQRELALFFQEGEL 136          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_LISW6 (Nucleoside diphosphate kinase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=ndk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.839e-38
Identity = 75/147 (51.02%), Postives = 107/147 (72.79%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 490
            MEQT++M+KPDGV+RGL+GEI+ + EKKG  L   KL+ +DR  AE+HY +   KPFF  LI +ITSGPV AM+ EG+ V+K  R ++G TNP ++  GTIR + A+ T RN+IHGSDS ESA++EI L+F P   ++++ ++  W+
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVAKIEKKGIKLVAGKLIQIDRKLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKIARRMMGKTNPLEADAGTIRAEYAVHTNRNVIHGSDSPESAKREIQLFFEPHEILSYEKAVDIWV 147          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_FRASC (Nucleoside diphosphate kinase OS=Frankia sp. (strain CcI3) GN=ndk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.839e-38
Identity = 72/132 (54.55%), Postives = 105/132 (79.55%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 448
            +E+T I++KPDGV RGLVGE++ R E+KG +L  L+L T++R  AE HY + +SKPFFG L+++ITSGP+VA++ EG   V+  R +IGAT+P ++APG++RGD A+  G+N++HGSDS ESA++EI L+FP
Sbjct:    3 VERTLILVKPDGVSRGLVGEVVGRLERKGLTLVALELRTLERSVAETHYGEHASKPFFGELVDFITSGPLVALVAEGPRAVEASRGLIGATDPVKAAPGSLRGDYALEIGQNLVHGSDSPESAKREIDLFFP 134          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_METBU (Nucleoside diphosphate kinase OS=Methanococcoides burtonii (strain DSM 6242) GN=ndk PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.401e-38
Identity = 74/149 (49.66%), Postives = 106/149 (71.14%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 496
            ME+T++M+KPDGVQR LVGEI+ R EKKG  +  L++  +    A++HY++ S +PFFGSL+ ++TSGP V+M+ EG   +K  R I GATNP  + PGTIRGDLA+  GRN++H SD+ ESA++EI L F +  I+ +  +   W+YE
Sbjct:    1 MERTYVMVKPDGVQRCLVGEIVSRIEKKGLKIAALRMNVMTEAAAKEHYKEHSERPFFGSLVSFVTSGPSVSMVIEGNNAIKIMRAINGATNPVDALPGTIRGDLAVDMGRNVVHASDAPESAEREIGLHFEESEISGYPRADDEWLYE 149          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_DEIGD (Nucleoside diphosphate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=ndk PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.401e-38
Identity = 74/131 (56.49%), Postives = 97/131 (74.05%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            ME+TF MIKPDGV+RGL  EI+ R +KKG+ + GLK M + R  AE+HY +   +PFFG L+++ITSGPVVA+  EGE  +   R ++GATNPA +APGTIR D A  TG N+ HGSDS ESA +E++L+F
Sbjct:    1 MERTFAMIKPDGVRRGLTPEILARIQKKGYRVVGLKQMLISRELAERHYAEHRERPFFGELVDFITSGPVVAIALEGENAIAGWRAMMGATNPANAAPGTIRADFATTTGENVTHGSDSPESAARELSLFF 131          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDKM_MOUSE (Nucleoside diphosphate kinase, mitochondrial OS=Mus musculus GN=Nme4 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.401e-38
Identity = 73/143 (51.05%), Postives = 98/143 (68.53%), Query Frame = 2
Query:   56 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLH 481
            E+T + +KPDGVQR LVG +I RFE++GF L G+K++        +HY DL  KPF+ +LI Y++SGPVVAM+WEG  VV   R +IG T+  ++APGTIRGD ++   RN+IH SDSV+ AQ+EI LWF     +NW    H
Sbjct:   37 ERTLVAVKPDGVQRRLVGTVIQRFERRGFKLVGMKMLQAPESILAEHYRDLQRKPFYPALISYMSSGPVVAMVWEGPNVVHISRAMIGHTDSTEAAPGTIRGDFSVHISRNVIHASDSVDGAQREIELWFQSSELLNWADGGH 179          
The following BLAST results are available for this feature:
BLAST of CF834682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_METKA1.273e-3952.94Nucleoside diphosphate kinase OS=Methanopyrus kand... [more]
NDK8_HUMAN1.273e-3956.93Putative nucleoside diphosphate kinase OS=Homo sap... [more]
NDK_THET81.663e-3958.78Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_THET21.663e-3958.78Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_DEIDV1.078e-3855.15Nucleoside diphosphate kinase OS=Deinococcus deser... [more]
NDK_LISW61.839e-3851.02Nucleoside diphosphate kinase OS=Listeria welshime... [more]
NDK_FRASC1.839e-3854.55Nucleoside diphosphate kinase OS=Frankia sp. (stra... [more]
NDK_METBU2.401e-3849.66Nucleoside diphosphate kinase OS=Methanococcoides ... [more]
NDK_DEIGD2.401e-3856.49Nucleoside diphosphate kinase OS=Deinococcus geoth... [more]
NDKM_MOUSE2.401e-3851.05Nucleoside diphosphate kinase, mitochondrial OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834682 ID=CF834682; Name=CF834682; organism=Citrus sinensis; type=EST; length=648bp
TGCTATTTCACTCTTTTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAG
AAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGC
CTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAA
GGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATG
AGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACC
TCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGAC
TGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAA
CCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGA
AGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGA
TGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAA
CTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCT
ATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGT
TATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGC
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