CF834682

Overview
NameCF834682
Unique NameCF834682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_AGRT5 (Nucleoside diphosphate kinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.246e-27
Identity = 61/136 (44.85%), Postives = 82/136 (60.29%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+TF MIKPD  +R L G I   FE  G  +   K + + +  AE  Y     +PFFG L+E +TSGP +  + EGE  +   R I+GATNPAQ+A GTIR   A+  G N +HGSD+ E+A +EIA WF +  I
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKVFEDNGLRIVASKRVWMSKREAEGFYAVHKERPFFGELVEGMTSGPTIVQVLEGENAILKNREIMGATNPAQAAEGTIRKSFALSIGENSVHGSDAPETAAQEIAYWFAETEI 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_VIBHB (Nucleoside diphosphate kinase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+TF ++KPD V+R L+GEI  R EK G  +   K++ +    A   Y +   KPFF +L E++TSGP++  + EGE  +   R ++G TNP ++A GTIR D A+    N +HGSDS ESA +EI  +FP+  I
Sbjct:    3 LERTFSIVKPDAVERNLIGEIYHRIEKAGLRIVAAKMVHLTEEQASGFYAEHEGKPFFPALKEFMTSGPIMVQVLEGEDAIARYRELMGKTNPEEAACGTIRADYALSMRHNSVHGSDSPESAAREIEFFFPESEI 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_SALAR (Nucleoside diphosphate kinase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 58/136 (42.65%), Postives = 86/136 (63.24%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+TF +IKP+ V + ++G I  RFE  GF + G +++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFRIVGTRMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGSDSLESAQREIAFFFGEGEV 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_LEGPA (Nucleoside diphosphate kinase OS=Legionella pneumophila (strain Paris) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 57/130 (43.85%), Postives = 84/130 (64.62%), Query Frame = 2
Query:   56 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            E T  +IKPD V + ++GEI  RFEK G  +   K++ + R  AE  Y+   ++PFF  L++++ SGPV+  + +G+  V   R I+GATNP ++APGTIR D A     N +HGSDS+E+A +EIA +F
Sbjct:    4 ELTLSIIKPDAVAKSVIGEIYTRFEKAGLDIVAAKMIQLSREQAESFYDIHRARPFFKDLVDFMISGPVMIQVLKGDNAVAKNREIMGATNPKEAAPGTIRADFADSIDANAVHGSDSLENAAREIAFFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_DESAH (Nucleoside diphosphate kinase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 57/133 (42.86%), Postives = 88/133 (66.17%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 451
            ME+T  +IKPDGV++ L+GE++ RF+ +G  +  LK+M + +  A+  Y     +PFF SL E++TSGP+V M+ EG+ V+   R ++GATN  ++  GTIR D A    +N++HGSD+ E+A  EI  +F D
Sbjct:    1 MERTLSIIKPDGVKKNLIGEVVKRFQDQGIHIAALKMMQLTQKQAQGFYAVHRERPFFNSLTEFMTSGPIVVMVLEGDDVIAKNRKLMGATNFKEAEEGTIRRDFATDIEKNVVHGSDAPETAAFEIGYFFND 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_BDEBA (Nucleoside diphosphate kinase OS=Bdellovibrio bacteriovorus GN=ndk PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 55/131 (41.98%), Postives = 85/131 (64.89%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +EQTF +IKP+ +++  +G+I+  FE  G  +   K+  +    AE+ Y +  ++PFFG L+ ++TSGPV+ M  +GEG V   R I+GAT+P ++ PGT+R       G N +HGSDS ESA +E+AL+F
Sbjct:    3 IEQTFSIIKPNAMKKNAIGDIVSMFEANGLKIAAAKITVLTTAKAEEFYAEHKARPFFGELVSFMTSGPVMLMCLQGEGAVLKNREIMGATDPKKANPGTVRAKFGDNVGENAVHGSDSPESAARELALFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_SHEPA (Nucleoside diphosphate kinase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.236e-26
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+TF +IKPD V +  +G I  RFE  G  +   K++ + +  AE  Y + S +PFFG+L+ ++TSGP++    EGE  V   R I+GATNPA++A GTIR D A     N  HGSDSV SA++E+A +F
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIIASKMIHLSKEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHGSDSVASAEREVAYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_SHEHH (Nucleoside diphosphate kinase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.236e-26
Identity = 60/131 (45.80%), Postives = 84/131 (64.12%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+TF +IKPD V +  +G I  RFE  G  +   K++ + +  AE  Y + S +PFFG+L+ ++TSGP++    EGE  V   R I+GATNPA++A GTIR D A     N  HGSDSV SA++EIA +F
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIIASKMVHLSQEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHGSDSVASAEREIAYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_SERP5 (Nucleoside diphosphate kinase OS=Serratia proteamaculans (strain 568) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.236e-26
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+TF +IKP+ V    +G I  RFE+ GF +   K++ + R  AE  Y +   +PFF  L+E++TSGP+V  + E E  V+  R I+GATNP  +  GT+R D A     N +HGSD+VESAQ+EIA +F +  I
Sbjct:    3 VERTFSIIKPNAVANNDIGAIYARFERAGFKIIASKMLRLTREQAEGFYAEHKGRPFFDGLVEFMTSGPIVVQVLEAENAVQRNRDIMGATNPDNALAGTLRADYADSFTANAVHGSDAVESAQREIAYFFNESEI 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PSYWF (Nucleoside diphosphate kinase OS=Psychrobacter sp. (strain PRwf-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.236e-26
Identity = 59/136 (43.38%), Postives = 84/136 (61.76%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+T  +IKPD V    +G I  RFE+ G  + G K++ +D   A   Y +   +PF+  L+ ++TSGPVV  + EGE  +   R I+GATNPA++A GTIR D A     N +HGSDS ESA++EIA +F D  +
Sbjct:    3 IERTLSIIKPDAVGGNHIGAIYSRFEEAGLKIVGAKMLHLDDEKAGGFYAEHKERPFYNDLVSFMTSGPVVVSVLEGENAIAKHREIMGATNPAEAAEGTIRKDFASSIDENAVHGSDSAESAKREIAYFFSDNEV 138          
The following BLAST results are available for this feature:
BLAST of CF834682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_AGRT57.246e-2744.85Nucleoside diphosphate kinase OS=Agrobacterium tum... [more]
NDK_VIBHB9.464e-2742.65Nucleoside diphosphate kinase OS=Vibrio harveyi (s... [more]
NDK_SALAR9.464e-2742.65Nucleoside diphosphate kinase OS=Salmonella arizon... [more]
NDK_LEGPA9.464e-2743.85Nucleoside diphosphate kinase OS=Legionella pneumo... [more]
NDK_DESAH9.464e-2742.86Nucleoside diphosphate kinase OS=Desulfobacterium ... [more]
NDK_BDEBA9.464e-2741.98Nucleoside diphosphate kinase OS=Bdellovibrio bact... [more]
NDK_SHEPA1.236e-2645.04Nucleoside diphosphate kinase OS=Shewanella pealea... [more]
NDK_SHEHH1.236e-2645.80Nucleoside diphosphate kinase OS=Shewanella halifa... [more]
NDK_SERP51.236e-2643.38Nucleoside diphosphate kinase OS=Serratia proteama... [more]
NDK_PSYWF1.236e-2643.38Nucleoside diphosphate kinase OS=Psychrobacter sp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834682 ID=CF834682; Name=CF834682; organism=Citrus sinensis; type=EST; length=648bp
TGCTATTTCACTCTTTTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAG
AAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGC
CTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAA
GGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATG
AGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACC
TCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGAC
TGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAA
CCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGA
AGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGA
TGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAA
CTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCT
ATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGT
TATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGC
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