CF834682

Overview
NameCF834682
Unique NameCF834682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_BRUME (Nucleoside diphosphate kinase OS=Brucella melitensis GN=ndk PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.614e-26
Identity = 58/131 (44.27%), Postives = 81/131 (61.83%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+TF MIKPD  +R L G II + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKAFALSIGENSVHGSDAPETAAEEIAYWF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK2_PARUW (Nucleoside diphosphate kinase 2 OS=Protochlamydia amoebophila (strain UWE25) GN=ndk2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.614e-26
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+T  +IKPD V    +GEII RFEK G  +   K+  +DR  AE  Y     +PFF  L+ ++T+GPV+ M+ EGE  +   R I+GAT+P ++APGTIR D A     N +HGSD+ E+A+ EI  +F
Sbjct:    3 LERTLSIIKPDAVGNNHIGEIIARFEKAGLRIVAAKMKQLDRKDAEGFYAVHKGRPFFEDLVGFMTTGPVMIMVLEGENAINKNREIMGATDPKKAAPGTIRADFAQTIDENAVHGSDAAETAKTEIEYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_YERPY (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+TF +IKP+ V    +G I  RFE  GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D A     N +HGSD+VESAQ+EIA +F
Sbjct:    3 LERTFSIIKPNAVANNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIIVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_YERPS (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+TF +IKP+ V    +G I  RFE  GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D A     N +HGSD+VESAQ+EIA +F
Sbjct:    3 LERTFSIIKPNAVANNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIIVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PROMH (Nucleoside diphosphate kinase OS=Proteus mirabilis (strain HI4320) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 56/136 (41.18%), Postives = 87/136 (63.97%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +++TF +IKP+ V++ ++G I  RFE  GFS+   K++ + R  AE  YE+   +PFF  L+E++TSGP++  + EGE  ++  R ++GATNP  +  GT+R D A     N +HGSDS  SA +EIA +F +  I
Sbjct:    3 IQRTFSIIKPNAVKKNVIGAIYNRFESAGFSIVAAKMLHLTREQAEGFYEEHKGRPFFDGLVEFMTSGPIMVQVLEGENAIQRHRDLMGATNPDNALAGTLRADYADSFTENAVHGSDSEASAAREIAYFFTENEI 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_CAMJR (Nucleoside diphosphate kinase OS=Campylobacter jejuni (strain RM1221) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            ME+T  +IKPD V++G++G+I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:    1 MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIDFFFKPNEI 136          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_CAMJ8 (Nucleoside diphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            ME+T  +IKPD V++G++G+I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:    1 MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIDFFFKPNEI 136          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_CAMC5 (Nucleoside diphosphate kinase OS=Campylobacter curvus (strain 525.92) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            M++T  +IKPD V++ +VG+II RFE  G  +   K + + +  A+  Y   S +PFF  L+E++TSGPVV M+ EGE  V   R ++GATNP ++A GTIR D A     N +HGSDS+E+A  EI  +F
Sbjct:    1 MQRTLSIIKPDAVKKNVVGKIIDRFESNGLRIAAAKKVKLSKCDAKAFYAVHSERPFFNDLVEFMTSGPVVVMVLEGENAVAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSLENAINEINFFF 131          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_ARCB4 (Nucleoside diphosphate kinase OS=Arcobacter butzleri (strain RM4018) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 58/131 (44.27%), Postives = 84/131 (64.12%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            MEQT  +IKPD V + +VG+I+ RFE  G  +   K + + +  AE  Y   +++PFF  L+E++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS+E+A+ EIA +F
Sbjct:    1 MEQTLSIIKPDAVAKNVVGKILDRFESAGLKIAATKKLQLSQADAEAFYAVHAARPFFKDLVEFMISGPVVVSVLEGENAMAKNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSLENAKNEIAFFF 131          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_YERP3 (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 57/131 (43.51%), Postives = 84/131 (64.12%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+TF +IKP+ V    +G I  RFE  GF++   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D A     N +HGSD+VESAQ+EIA +F
Sbjct:    3 LERTFSIIKPNAVANNNIGAIYARFESAGFNIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTANAVHGSDAVESAQREIAYFF 133          
The following BLAST results are available for this feature:
BLAST of CF834682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BRUME1.614e-2644.27Nucleoside diphosphate kinase OS=Brucella melitens... [more]
NDK2_PARUW1.614e-2644.27Nucleoside diphosphate kinase 2 OS=Protochlamydia ... [more]
NDK_YERPY2.108e-2643.51Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_YERPS2.108e-2643.51Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_PROMH2.108e-2641.18Nucleoside diphosphate kinase OS=Proteus mirabilis... [more]
NDK_CAMJR2.108e-2642.65Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_CAMJ82.108e-2642.65Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_CAMC52.108e-2645.04Nucleoside diphosphate kinase OS=Campylobacter cur... [more]
NDK_ARCB42.108e-2644.27Nucleoside diphosphate kinase OS=Arcobacter butzle... [more]
NDK_YERP32.754e-2643.51Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834682 ID=CF834682; Name=CF834682; organism=Citrus sinensis; type=EST; length=648bp
TGCTATTTCACTCTTTTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAG
AAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGC
CTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAA
GGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATG
AGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACC
TCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGAC
TGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAA
CCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGA
AGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGA
TGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAA
CTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCT
ATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGT
TATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGC
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