CF834682

Overview
NameCF834682
Unique NameCF834682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_SULNB (Nucleoside diphosphate kinase OS=Sulfurovum sp. (strain NBC37-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            MEQT  +IKPD V + ++G+I+ RFE  G  +   K   + R  AE  Y   + +PFF  L++++ SGPVV  + EGE  +   R ++GATNPA++ PGTIR D A     N +HGSDSVE+A+ EI  +F
Sbjct:    1 MEQTLSIIKPDAVAKNVIGQILARFEAAGLRIAATKKTRLSRVDAEAFYAIHAERPFFKDLVDFMISGPVVVTVLEGENAMAKNRELMGATNPAEAEPGTIRADFADSIDANAVHGSDSVENAEIEINFFF 131          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PSEPF (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 57/131 (43.51%), Postives = 84/131 (64.12%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +++TF +IKPD V + ++G+I  RFE  G  +   KL  + +  AE  Y + S++ FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++APGTIR D A     N +HGSDS  +A +EIA +F
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEDAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGELVAFMTSGPVVVQVLEGENAIARNRELMGATNPKEAAPGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PSEMY (Nucleoside diphosphate kinase OS=Pseudomonas mendocina (strain ymp) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +++TF +IKPD V + ++GEI  RFEK G  +   K++ +    A   Y + S + FF  L+ ++TSGPV+  + EGE  V   R ++GATNP ++APGTIR D A+    N +HGSDS  SA +EIA +F
Sbjct:    3 VQRTFSIIKPDAVAKNVIGEITTRFEKAGLRVVASKMVQLSEREAAGFYAEHSERGFFKDLVAFMTSGPVIVQVLEGEDAVLKNRELMGATNPKEAAPGTIRADFAVSIDENAVHGSDSEASAAREIAYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PHEZH (Nucleoside diphosphate kinase OS=Phenylobacterium zucineum (strain HLK1) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 62/135 (45.93%), Postives = 84/135 (62.22%), Query Frame = 2
Query:   56 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            E+TF +IKPD  +R L G++    E  G  +   K + + R  AEK YE    +PFFG L+E++TS PVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS+E+A+ EIA +F +  I
Sbjct:    3 ERTFSIIKPDATRRNLTGKVNAVIEDAGLRIVAQKRIRMSRAQAEKFYEVHKERPFFGELVEFMTSAPVVVQVLEGENAVARYREVMGATNPAQAADGTIRKLYAESVGENSVHGSDSLENAKIEIAQFFTEDEI 137          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_HELHP (Nucleoside diphosphate kinase OS=Helicobacter hepaticus GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 58/131 (44.27%), Postives = 83/131 (63.36%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            MEQT  +IKPD V++G++G+II RFE     +  +K + + R  AE  Y     +PFF  L++++ SGPVV M+ EG   V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EIA +F
Sbjct:    1 MEQTLSIIKPDAVKKGVIGKIIDRFESNNLRICAMKKLQLTRCDAEAFYAIHKERPFFKDLVDFMISGPVVVMVLEGNNAVMKNRDLMGATNPKEAEAGTIRADFAQSIDANAVHGSDSLENAKNEIAFFF 131          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_COXBN (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 57/134 (42.54%), Postives = 85/134 (63.43%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PD 451
            +E+T  +IKPD V + ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPD 136          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_COXB1 (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain CbuK_Q154) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 57/134 (42.54%), Postives = 85/134 (63.43%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PD 451
            +E+T  +IKPD V + ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEKAGLKIISAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPD 136          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_ALISL (Nucleoside diphosphate kinase OS=Aliivibrio salmonicida (strain LFI1238) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 58/136 (42.65%), Postives = 88/136 (64.71%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+TF ++KPD V+R L+G I  R EK G  +   K++++ +  A+  Y +   K FF +L+EY+TSGPV+  + EGE V+   R ++G TNP ++A G++R D AI    N +HGSDS ESA +EIA +F +  I
Sbjct:    3 IERTFSIVKPDAVKRNLIGAIYRRIEKTGMQVVAAKMLSLTKEQAQGFYAEHEGKEFFDALVEYMTSGPVMVQVLEGESVITRYRELMGKTNPDEAACGSLRSDYAISMRYNSVHGSDSPESAAREIAYFFVEDEI 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_YERPB (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.596e-26
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+TF +IKP+ V    +G I  RFE  GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D A     N +HGSD+VESAQ+EIA +F
Sbjct:    3 LERTFSIIKPNAVANNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PERMH (Nucleoside diphosphate kinase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.596e-26
Identity = 56/131 (42.75%), Postives = 85/131 (64.89%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+T +++KPD V+R L G+II   ++KGF L  LK + + +  A++ Y     +PF+  L E+++SGP+VAM+WEGE  +   R I+GATNP ++  GT+R       G N +HGSDS ESA+ EI  +F
Sbjct:    3 VERTLMLVKPDAVRRNLEGKIIAHVQEKGFKLVALKKLKLTKEQAQQFYIVHKDRPFYDELCEFMSSGPIVAMVWEGENAISRIREIMGATNPEEAEEGTLRKLYGTNVGENAVHGSDSPESAKVEIPFFF 133          
The following BLAST results are available for this feature:
BLAST of CF834682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SULNB2.754e-2644.27Nucleoside diphosphate kinase OS=Sulfurovum sp. (s... [more]
NDK_PSEPF2.754e-2643.51Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_PSEMY2.754e-2643.51Nucleoside diphosphate kinase OS=Pseudomonas mendo... [more]
NDK_PHEZH2.754e-2645.93Nucleoside diphosphate kinase OS=Phenylobacterium ... [more]
NDK_HELHP2.754e-2644.27Nucleoside diphosphate kinase OS=Helicobacter hepa... [more]
NDK_COXBN2.754e-2642.54Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_COXB12.754e-2642.54Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_ALISL2.754e-2642.65Nucleoside diphosphate kinase OS=Aliivibrio salmon... [more]
NDK_YERPB3.596e-2643.51Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_PERMH3.596e-2642.75Nucleoside diphosphate kinase OS=Persephonella mar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834682 ID=CF834682; Name=CF834682; organism=Citrus sinensis; type=EST; length=648bp
TGCTATTTCACTCTTTTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAG
AAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGC
CTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAA
GGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATG
AGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACC
TCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGAC
TGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAA
CCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGA
AGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGA
TGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAA
CTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCT
ATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGT
TATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGC
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