CF834682

Overview
NameCF834682
Unique NameCF834682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_RHOCS (Nucleoside diphosphate kinase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.135e-26
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+T  ++KPD  +R L G+I  RFE+ G  +   K + + R  AE+ Y   + +PF+G L+ ++ SGPVV  + EGE  V   R I+GATNPA +APGTIR D A     N +HGSDS+E+A  EIA +F
Sbjct:    3 VERTLSIVKPDATRRNLTGKINARFEEAGLRIVAQKRIRLTREQAEQFYIVHAERPFYGELVSFMISGPVVVQVLEGENAVARNREIMGATNPANAAPGTIRKDFAESIEANSVHGSDSLENAATEIAYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_RHIEC (Nucleoside diphosphate kinase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.135e-26
Identity = 62/136 (45.59%), Postives = 80/136 (58.82%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+TF MIKPD  +R L G I    E  G  +   K + + R  AE  Y     +PFFG L+E +TSGP V  + EGEG +   R I+GATNPA +A GTIR   A+  G N +HGSD+ E+A +EI  WF D  I
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKMLEDAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEGMTSGPTVVQVLEGEGAILKNREIMGATNPANAAEGTIRKVHALSIGENSVHGSDAPETAAQEIKYWFSDTEI 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_HAHCH (Nucleoside diphosphate kinase OS=Hahella chejuensis (strain KCTC 2396) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.135e-26
Identity = 56/136 (41.18%), Postives = 83/136 (61.03%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+T  +IKPD V + ++GEI  RFEK G  +   K++ + +  AE  Y +   + FF  L+ ++TSGPVV    EGE  +   R ++GATNP ++ PGTIR D A     N +HGSDS  SA++E+A +F +  I
Sbjct:    3 VERTLSIIKPDAVAKNVIGEIYSRFEKAGLRIVAAKMLHLSQEQAEGFYAEHKERGFFPDLVAFMTSGPVVVQALEGENAIALNRQLMGATNPKEAEPGTIRADFASSIDANAVHGSDSAASAEREVAYFFSENEI 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_BORPE (Nucleoside diphosphate kinase OS=Bordetella pertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.135e-26
Identity = 53/133 (39.85%), Postives = 85/133 (63.91%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 451
            +E+T  +IKPD V + +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:    3 IERTLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_BORPA (Nucleoside diphosphate kinase OS=Bordetella parapertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.135e-26
Identity = 53/133 (39.85%), Postives = 85/133 (63.91%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 451
            +E+T  +IKPD V + +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:    3 IERTLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_BORBR (Nucleoside diphosphate kinase OS=Bordetella bronchiseptica GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.135e-26
Identity = 53/133 (39.85%), Postives = 85/133 (63.91%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 451
            +E+T  +IKPD V + +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:    3 IERTLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_VIBVY (Nucleoside diphosphate kinase OS=Vibrio vulnificus (strain YJ016) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.012e-26
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+TF +IKPD V+R L+GEI  R EK G  +   K++ ++   A   Y +   K FF +L E++TSGP++  + EGE  +   R ++G TNP ++A GTIR D A+    N +HGSDS  SA +EIA +FP+  I
Sbjct:    3 LERTFSIIKPDAVERNLIGEIYHRIEKAGLRIIAAKMVHLNDEQASGFYAEHEGKEFFPALKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTIRADYALSMRHNSVHGSDSPASAAREIAFFFPESEI 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_VIBVU (Nucleoside diphosphate kinase OS=Vibrio vulnificus GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.012e-26
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+TF +IKPD V+R L+GEI  R EK G  +   K++ ++   A   Y +   K FF +L E++TSGP++  + EGE  +   R ++G TNP ++A GTIR D A+    N +HGSDS  SA +EIA +FP+  I
Sbjct:    3 LERTFSIIKPDAVERNLIGEIYHRIEKAGLRIIAAKMVHLNDEQASGFYAEHEGKEFFPALKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTIRADYALSMRHNSVHGSDSPASAAREIAFFFPESEI 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_BORA1 (Nucleoside diphosphate kinase OS=Bordetella avium (strain 197N) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.012e-26
Identity = 52/133 (39.10%), Postives = 85/133 (63.91%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 451
            +++T  +IKPD V + ++G+I+ RFE+ G  +   +L  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:    3 IQRTLSIIKPDAVAKNVIGQIVARFEQAGLKVIAARLQQLSRADAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGENAIQVNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_XANOR (Nucleoside diphosphate kinase OS=Xanthomonas oryzae pv. oryzae GN=ndk PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.046e-25
Identity = 59/131 (45.04%), Postives = 79/131 (60.31%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+T  +IKPD V + ++GEI  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:    3 LERTLSIIKPDAVAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
The following BLAST results are available for this feature:
BLAST of CF834682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_RHOCS6.135e-2645.04Nucleoside diphosphate kinase OS=Rhodospirillum ce... [more]
NDK_RHIEC6.135e-2645.59Nucleoside diphosphate kinase OS=Rhizobium etli (s... [more]
NDK_HAHCH6.135e-2641.18Nucleoside diphosphate kinase OS=Hahella chejuensi... [more]
NDK_BORPE6.135e-2639.85Nucleoside diphosphate kinase OS=Bordetella pertus... [more]
NDK_BORPA6.135e-2639.85Nucleoside diphosphate kinase OS=Bordetella parape... [more]
NDK_BORBR6.135e-2639.85Nucleoside diphosphate kinase OS=Bordetella bronch... [more]
NDK_VIBVY8.012e-2642.65Nucleoside diphosphate kinase OS=Vibrio vulnificus... [more]
NDK_VIBVU8.012e-2642.65Nucleoside diphosphate kinase OS=Vibrio vulnificus... [more]
NDK_BORA18.012e-2639.10Nucleoside diphosphate kinase OS=Bordetella avium ... [more]
NDK_XANOR1.046e-2545.04Nucleoside diphosphate kinase OS=Xanthomonas oryza... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834682 ID=CF834682; Name=CF834682; organism=Citrus sinensis; type=EST; length=648bp
TGCTATTTCACTCTTTTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAG
AAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGC
CTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAA
GGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATG
AGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACC
TCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGAC
TGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAA
CCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGA
AGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGA
TGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAA
CTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCT
ATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGT
TATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGC
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