CF834682

Overview
NameCF834682
Unique NameCF834682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_VIBCH (Nucleoside diphosphate kinase OS=Vibrio cholerae GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.367e-25
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+TF +IKPD V+R L+GEI  R EK G  +   K++ +    A   Y +   KPFF  L E++TSGP++  + EGE  +   R ++G TNP ++A GT+R D A+    N +HGSDS  SA +EI  +FP+  I
Sbjct:    3 LERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTLRADYALSMRYNSVHGSDSPASAAREIEFFFPESEI 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_VIBC3 (Nucleoside diphosphate kinase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.367e-25
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 460
            +E+TF +IKPD V+R L+GEI  R EK G  +   K++ +    A   Y +   KPFF  L E++TSGP++  + EGE  +   R ++G TNP ++A GT+R D A+    N +HGSDS  SA +EI  +FP+  I
Sbjct:    3 LERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTLRADYALSMRYNSVHGSDSPASAAREIEFFFPESEI 138          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_VEREI (Nucleoside diphosphate kinase OS=Verminephrobacter eiseniae (strain EF01-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.367e-25
Identity = 54/132 (40.91%), Postives = 83/132 (62.88%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 448
            +E+T  +IKPD V + ++G+I  RFE  G  +   +++ + RP AE+ Y     +PFF  L+E++ SGPV+  + EGE  V   R ++GAT+P ++  GTIR D A     N +HGSD+ E+AQ E+A +FP
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYARFEAAGLKIVAARMVHLARPEAERFYAVHKERPFFKDLVEFMISGPVMVQVLEGENAVLKNRELMGATDPKKAQTGTIRADFADSIDANAVHGSDAAETAQAEVAFFFP 134          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_SILST (Nucleoside diphosphate kinase OS=Silicibacter sp. (strain TM1040) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.367e-25
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +E+TF +IKPD  +R L G I  +FE+ G  +   K + + +  A K Y   + +PF+  L E+++S PVV  + EGEG +   R I+GATNPA +APGTIR + A   G N +HGSD+ E+A +EIA +F
Sbjct:    3 LERTFSIIKPDATRRNLTGAINAKFEEAGLRIVAQKRIHMTKAQAGKFYAVHAERPFYDELCEFMSSAPVVVQVLEGEGAIAKNREIMGATNPADAAPGTIRAEFAESVGENSVHGSDAPETAAEEIAYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PSEPG (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain GB-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.367e-25
Identity = 55/131 (41.98%), Postives = 84/131 (64.12%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +++TF +IKPD V + ++G+I  RFE+ G  +   K+  + +  AE  Y + S++ FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSARGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PSEFS (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain SBW25) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.367e-25
Identity = 56/131 (42.75%), Postives = 83/131 (63.36%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +++TF +IKPD V + ++GEI  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:    3 VQRTFSIIKPDAVAKNVIGEITTRFEKAGLKVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREISYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_CHLCV (Nucleoside diphosphate kinase OS=Chlamydophila caviae GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.367e-25
Identity = 59/131 (45.04%), Postives = 82/131 (62.60%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            MEQT  +IKPD V +  +GEI+  FEK GF +  +K++ +    AE  Y    S+PFF  L++++ SGPVV M+ EG+  V   R I+GATNP ++A GTIR       G N +HGSDS+E+A  EI  +F
Sbjct:    1 MEQTLSIIKPDSVGKAHIGEIVAIFEKSGFRIAAMKMVHLSVKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGDNAVVRNREIMGATNPQEAAQGTIRAQFGESIGINAVHGSDSLENAAIEINYFF 131          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_THIDA (Nucleoside diphosphate kinase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.785e-25
Identity = 55/132 (41.67%), Postives = 83/132 (62.88%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 448
            +++TF +IKPD V + ++G+I+ RFE  G  +   K+  + R  AE  Y     +PFF  L++++ SGPVV  + EGE  +   RT++GAT+P ++ PGTIR D A     N +HGSD+ E+A  EIA +FP
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKIVSRFETNGLKVVASKMKHLSRQEAEGFYAVHKDRPFFKDLVDFMVSGPVVLQVLEGEDAIAKNRTLMGATDPKKAEPGTIRADFAESIDANAVHGSDAPETAAVEIAYFFP 134          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PSEU2 (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.785e-25
Identity = 56/131 (42.75%), Postives = 83/131 (63.36%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +++TF +IKPD V + ++GEI  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:    3 VQRTFSIIKPDAVAKNVIGEITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_PSESM (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. tomato GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.785e-25
Identity = 56/131 (42.75%), Postives = 83/131 (63.36%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 445
            +++TF +IKPD V + ++GEI  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:    3 VQRTFSIIKPDAVAKNVIGEITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133          
The following BLAST results are available for this feature:
BLAST of CF834682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_VIBCH1.367e-2541.91Nucleoside diphosphate kinase OS=Vibrio cholerae G... [more]
NDK_VIBC31.367e-2541.91Nucleoside diphosphate kinase OS=Vibrio cholerae s... [more]
NDK_VEREI1.367e-2540.91Nucleoside diphosphate kinase OS=Verminephrobacter... [more]
NDK_SILST1.367e-2543.51Nucleoside diphosphate kinase OS=Silicibacter sp. ... [more]
NDK_PSEPG1.367e-2541.98Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEFS1.367e-2542.75Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_CHLCV1.367e-2545.04Nucleoside diphosphate kinase OS=Chlamydophila cav... [more]
NDK_THIDA1.785e-2541.67Nucleoside diphosphate kinase OS=Thiobacillus deni... [more]
NDK_PSEU21.785e-2542.75Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]
NDK_PSESM1.785e-2542.75Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834682 ID=CF834682; Name=CF834682; organism=Citrus sinensis; type=EST; length=648bp
TGCTATTTCACTCTTTTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAG
AAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGC
CTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAA
GGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATG
AGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACC
TCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGAC
TGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAA
CCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGA
AGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGA
TGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAA
CTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCT
ATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGT
TATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGC
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