CF834687

Overview
NameCF834687
Unique NameCF834687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834687_ssr517 microsatellite CF834687_ssr517:517..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.474e-65
Identity = 118/185 (63.78%), Postives = 147/185 (79.46%), Query Frame = -3
Query:  183 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSM 737
            KSG+CGTVVRNAE+K++D + G SLP N  GEICIRG QIMKGYLNDPEATA  I+ EGWLHT               DR+KE+IK+KGFQV P+E+EALL++HP I+DAAVVP  DE AGEVPVAFVVRSNG  + E+ +K++I+KQV+FYKR+ +++FV  +PKSPSGKILRKDLRA+LA+ +
Sbjct:  359 KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLRARLAAGI 543          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.474e-65
Identity = 118/185 (63.78%), Postives = 147/185 (79.46%), Query Frame = -3
Query:  183 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSM 737
            KSG+CGTVVRNAE+K++D + G SLP N  GEICIRG QIMKGYLNDPEATA  I+ EGWLHT               DR+KE+IK+KGFQV P+E+EALL++HP I+DAAVVP  DE AGEVPVAFVVRSNG  + E+ +K++I+KQV+FYKR+ +++FV  +PKSPSGKILRKDLRA+LA+ +
Sbjct:  359 KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLRARLAAGI 543          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.456e-65
Identity = 119/186 (63.98%), Postives = 147/186 (79.03%), Query Frame = -3
Query:  180 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSMP 737
            KSGSCGTVVRNAELK++D + G SL  N  GEICIRG QIMKGYLNDPEAT   ID +GWLHT               DR+KEIIK+KGFQVPP+E+EALL++HP I DAAVV  KD++AGEVPVAF+VR+ G E+ E+ IK+++AK+VVFYKR+ K++F  +IPK+PSGKILRKDLRA+LA+ +P
Sbjct:  355 KSGSCGTVVRNAELKIVDPDTGTSLGRNQSGEICIRGEQIMKGYLNDPEATKNTIDEDGWLHTGDIGFVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDDLAGEVPVAFIVRTEGSEITEDEIKKFVAKEVVFYKRINKVFFTDSIPKNPSGKILRKDLRARLAAGIP 540          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL1_SOYBN (4-coumarate--CoA ligase 1 (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.442e-64
Identity = 122/187 (65.24%), Postives = 148/187 (79.14%), Query Frame = -3
Query:  180 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGF-ELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSMP 737
            K G+CGTVVRNAE+K++D E G SLP N  GEICIRG QIMKGYLND EAT   ID +GWLHT               DR+KE+IK+KGFQV P+E+EALLL+HP I+DAAVVP KDE AGEVPVAFVV SNG+ +  E+ IK++I+KQVVFYKR+ +++F+ AIPKSPSGKILRKDLRAK+A+S+P
Sbjct:  106 KPGACGTVVRNAEMKIVDPETGHSLPRNQSGEICIRGDQIMKGYLNDGEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPKISDAAVVPMKDEAAGEVPVAFVVISNGYTDTTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKIAASVP 292          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.221e-63
Identity = 118/186 (63.44%), Postives = 146/186 (78.49%), Query Frame = -3
Query:  180 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSMP 737
            KSG+CGTVVRNAELK++D + G SLP N  GEICIRG QIMKGYLN+PEAT   ID +GWLHT               DR+KE+IK+KGFQV P+E+EA+L++H ++ADAAVVP KD+  GE+PVAFVV  +G  + ++ IK+Y+AKQVVFYKRL KI+FV AIPK+PSGKILRKDLRAKLA+ +P
Sbjct:  352 KSGACGTVVRNAELKIVDPDTGLSLPRNQPGEICIRGKQIMKGYLNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKYKGFQVAPAELEAMLIAHAAVADAAVVPMKDDSCGEIPVAFVVARDGSGITDDEIKQYVAKQVVFYKRLHKIFFVDAIPKAPSGKILRKDLRAKLAAGIP 537          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL4_ARATH (4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.949e-61
Identity = 116/181 (64.09%), Postives = 138/181 (76.24%), Query Frame = -3
Query:  195 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKL 737
            KSG+CGTV+RNAE+KV+D E G SLP N  GEIC+RG Q+MKGYLNDPEATA  ID +GWLHT               DR+KE+IKFKG+QV P+E+EALL+SHPSI DAAVV  KDEVA EVPVAFV RS G +L E+ +K Y+ KQVV YKR+  ++F+  IPK+ SGKILRKDLRAKL
Sbjct:  384 KSGACGTVIRNAEMKVVDTETGISLPRNKSGEICVRGHQLMKGYLNDPEATARTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKFKGYQVAPAELEALLISHPSIDDAAVVAMKDEVADEVPVAFVARSQGSQLTEDDVKSYVNKQVVHYKRIKMVFFIEVIPKAVSGKILRKDLRAKL 564          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL1_ARATH (4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.675e-61
Identity = 113/185 (61.08%), Postives = 142/185 (76.76%), Query Frame = -3
Query:  183 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSM 737
            KSG+CGTVVRNAE+K++D + G SL  N  GEICIRG QIMKGYLN+P ATA  ID +GWLHT               DR+KE+IK+KGFQV P+E+EALL+ HP I D AVV  K+E AGEVPVAFVV+S   EL+E+ +K++++KQVVFYKR+ K++F  +IPK+PSGKILRKDLRAKLA+ +
Sbjct:  377 KSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 561          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 2.155e-60
Identity = 113/185 (61.08%), Postives = 143/185 (77.30%), Query Frame = -3
Query:  183 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSM 737
            KSG+CGTVVRNAE+K++D + G SLP N  GEICIRG QIMKGYLNDP ATA+ ID +GWLHT               DR+KE+IK+KGFQV P+E+E+LL+ HP I D AVV  K+E AGEVPVAFVVRS    ++E+ IK++++KQVVFYKR+ K++F  +IPK+PSGKILRKDLRA+LA+ +
Sbjct:  370 KSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEEDAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILRKDLRARLANGL 554          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.494e-56
Identity = 108/182 (59.34%), Postives = 140/182 (76.92%), Query Frame = -3
Query:  195 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVV-PQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKL 737
            KSG+CGTVVRNAELK+ID + G SL  N  GEICIRG QIMKGYLN+PEAT   ID EGWLHT               DR+KEIIK++GFQV P+E+EALL++HPSIADAAVV  Q +   GE+PVAFV ++ G EL+E+ +K+++AK+V++YK++ +++FV  IPK+PSGKILRK+LR +L
Sbjct:  376 KSGACGTVVRNAELKIIDPDTGKSLGRNLPGEICIRGQQIMKGYLNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITHPSIADAAVVGKQIEPEIGEIPVAFVAKTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDKIPKAPSGKILRKELRKQL 557          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL7_ARATH (4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.558e-45
Identity = 90/184 (48.91%), Postives = 123/184 (66.85%), Query Frame = -3
Query:  183 SGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSM 734
            SGS G +    E +++  E G S P N +GEI +RGP +MKGYLN+P+AT   ID + W+HT               DR+KE+IK+KGFQV P+E+E LL+SHP I DA V+P  DE AGEVP+AFVVRS    + E+ I+++IAKQV  YKRL ++ F+  +PKS +GKILR++L  ++ S M
Sbjct:  361 SGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIPFPDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRRELVQQVRSKM 544          
The following BLAST results are available for this feature:
BLAST of CF834687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
4CL2_SOLTU6.474e-6563.784-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]
4CL1_SOLTU6.474e-6563.784-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]
4CL3_ORYSJ8.456e-6563.98Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa... [more]
4CL1_SOYBN1.442e-6465.244-coumarate--CoA ligase 1 (Fragment) OS=Glycine ma... [more]
4CL5_ORYSJ1.221e-6363.44Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CL4_ARATH1.949e-6164.094-coumarate--CoA ligase 4 OS=Arabidopsis thaliana ... [more]
4CL1_ARATH9.675e-6161.084-coumarate--CoA ligase 1 OS=Arabidopsis thaliana ... [more]
4CL2_ARATH2.155e-6061.084-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
4CL1_ORYSJ5.494e-5659.34Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa... [more]
4CLL7_ARATH2.558e-4548.914-coumarate--CoA ligase-like 7 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834687 ID=CF834687; Name=CF834687; organism=Citrus sinensis; type=EST; length=739bp
ATAAGAATTATTAATTTTACCAAAATTTATTACAATAACCCTTTGGAAAA
CTACTCATCAGAATTACATATTACAAGCAAACATGATAATTTTTTTTGTC
ACACCATTTGAAGTTCTTGAATGCCAACAACTCAAAGGCGAACAAAAACT
AACGCAATAAATAAGAAGAATTAATTCAAGGGCATTGAAGAGGCCAGCTT
GGCTCTGAGATCTTTCCTCAAAATCTTACCGGAAGGAGATTTTGGAATCG
CATGAACAAAATAAATCTTGGGCAGTCTCTTGTAAAACACTACCTGTTTT
GCTATGTATTCTTTAATGGCTTCCTCGGCAAGTTCAAACCCATTTGATCG
AACTACAAATGCAACTGGAACTTCTCCTGCAACTTCATCTTTTTGCGGAA
CCACAGCTGCATCTGCAATTGATGGGTGGCTTAAAAGGAGGGCTTCAATC
TCCGACGGCGGCACCTGGAATCCTTTGAATTTGATGATTTCCTTGACCCT
ATCGACTATGAAAACCTCATCATCATCATCAACAAAGCCTATGTCACCAG
TATGAAGCCAACCCTCAACGTCTATAATTGCCGCAGTTGCCTCAGGATCA
TTCAAGTAACCTTTCATAATTTGAGGGCCGCGGATGCAAATTTCGCCACG
ATGATTGTGGGGAAGGGAGGCACCAACTTCATGGTCAATAACTTTGAGCT
CAGCATTTCTAACAACCGTGCCACATGATCCTGACTTTG
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