CF834687

Overview
NameCF834687
Unique NameCF834687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834687_ssr517 microsatellite CF834687_ssr517:517..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: TYCB_BREPA (Tyrocidine synthase 2 OS=Brevibacillus parabrevis GN=tycB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 49/178 (27.53%), Postives = 83/178 (46.63%), Query Frame = -3 
Query:  207 GTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAA-IIDV-----EGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDL 722
            G  + N  + ++D  +    P    GE+ I G  + +GYL+ PE TA   +D      E    T                R+   +K +G ++   EIE+ LL+HP+I +A V+ + DE  G+   A+VV      L++E ++ Y+A+ +  Y        +  IP +P+GK  R+ L
Sbjct:  783 GKPISNTGIYILDEGLQLK-PEGIVGELYISGANVGRGYLHQPELTAEKFLDNPYQPGERMYRTGDLALWLPDGQLEFLGRIDHQVKIRGHRIELGEIESRLLNHPAIKEAVVIDRADETGGKFLCAYVVLQKA--LSDEEMRAYLAQALPEYMIPSFFVTLERIPVTPNGKTDRRAL 957
The following BLAST results are available for this feature:
BLAST of CF834687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
TYCB_BREPA9.182e-1127.53Tyrocidine synthase 2 OS=Brevibacillus parabrevis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834687 ID=CF834687; Name=CF834687; organism=Citrus sinensis; type=EST; length=739bp
ATAAGAATTATTAATTTTACCAAAATTTATTACAATAACCCTTTGGAAAA
CTACTCATCAGAATTACATATTACAAGCAAACATGATAATTTTTTTTGTC
ACACCATTTGAAGTTCTTGAATGCCAACAACTCAAAGGCGAACAAAAACT
AACGCAATAAATAAGAAGAATTAATTCAAGGGCATTGAAGAGGCCAGCTT
GGCTCTGAGATCTTTCCTCAAAATCTTACCGGAAGGAGATTTTGGAATCG
CATGAACAAAATAAATCTTGGGCAGTCTCTTGTAAAACACTACCTGTTTT
GCTATGTATTCTTTAATGGCTTCCTCGGCAAGTTCAAACCCATTTGATCG
AACTACAAATGCAACTGGAACTTCTCCTGCAACTTCATCTTTTTGCGGAA
CCACAGCTGCATCTGCAATTGATGGGTGGCTTAAAAGGAGGGCTTCAATC
TCCGACGGCGGCACCTGGAATCCTTTGAATTTGATGATTTCCTTGACCCT
ATCGACTATGAAAACCTCATCATCATCATCAACAAAGCCTATGTCACCAG
TATGAAGCCAACCCTCAACGTCTATAATTGCCGCAGTTGCCTCAGGATCA
TTCAAGTAACCTTTCATAATTTGAGGGCCGCGGATGCAAATTTCGCCACG
ATGATTGTGGGGAAGGGAGGCACCAACTTCATGGTCAATAACTTTGAGCT
CAGCATTTCTAACAACCGTGCCACATGATCCTGACTTTG
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