CF834687

Overview
NameCF834687
Unique NameCF834687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834687_ssr517 microsatellite CF834687_ssr517:517..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL1_ORYSJ (4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.833e-43
Identity = 90/182 (49.45%), Postives = 121/182 (66.48%), Query Frame = -3
Query:  186 GSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASS 731
            GS GT+V   E K++D +    LP N  GEIC+RGP +M+GY N+ +AT   I  +GWLHT               DR+KE+IK+KGFQ+ P+E+E LLLSHP I DA V+P  D  AGEVP+A+VVRS    L E  ++++I KQV +YKRL ++ FV ++PKS SGKILR+ L A++ SS
Sbjct:  370 GSTGTLVSGVEAKIVDIKTLKHLPPNQVGEICVRGPNVMQGYFNNVQATEFTIK-QGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPDAKAGEVPIAYVVRSPDSSLTEVDVQKFIEKQVAYYKRLKRVTFVGSVPKSASGKILRRQLIAQVRSS 550          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.027e-42
Identity = 86/182 (47.25%), Postives = 120/182 (65.93%), Query Frame = -3
Query:  186 GSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASS 731
            G+ G +  N E K++D + G +LP N  GE+ IRGP +MKGY  + EAT + +  +GWL T               DR+KE+IK+KG+QVPP+E+EALLL+HP + D AV+P  D   G+ P+A++VR  G  L+E  + E++AKQV  YK++ K+ FV  IPK+ SGKILRKDL  KLA+S
Sbjct:  370 GTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIRGPYVMKGYFKNAEATQSTLTPDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQVPPAELEALLLTHPEVTDVAVIPFPDREVGQFPMAYIVRKKGSNLSEREVMEFVAKQVAPYKKVRKVAFVTDIPKNASGKILRKDL-IKLATS 550          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL9_ORYSJ (4-coumarate--CoA ligase-like 9 OS=Oryza sativa subsp. japonica GN=4CLL9 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.647e-42
Identity = 90/185 (48.65%), Postives = 117/185 (63.24%), Query Frame = -3
Query:  183 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSM 737
            K  S G ++ N E+K +D + G SLP N  GE+C+R   +M+GY    E T   +D +GWLHT               DR+KE+IK+KGFQV P+E+EA+LLSHPS+ DAAV    DE AGEVPVA VVR +G E  EE I  Y+A++V  YKR+  ++ V AIPKS SGKILR+ LR +    M
Sbjct:  367 KKSSVGFILPNLEVKFVDPDTGRSLPANTPGELCVRSQSVMQGYYKRKEETERTVDGKGWLHTGDVGYIDGDGDVFIVDRIKELIKYKGFQVAPAELEAVLLSHPSVEDAAVFGVPDEEAGEVPVACVVRRHGAEEGEEEIVAYVAERVASYKRVRVLHIVDAIPKSVSGKILRRQLRDEFIKRM 551          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL6_ORYSJ (4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.457e-42
Identity = 87/175 (49.71%), Postives = 116/175 (66.29%), Query Frame = -3
Query:  207 GSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDL 731
            GS G +    + K++D   G  L    RGE+ IRGP +MKGY+ DPEATAA I  +GWL T               DR+KE+IK+KG+QVPP+E+E +L S P IADAAVVP  DE AG++P+AFVVR  G  L E+ +   +AK V  YK++ ++ FV+AIPKSP+GKILR++L
Sbjct:  413 GSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRGPVVMKGYVGDPEATAATITPDGWLKTGDLCYFNEDGYLYVVDRLKELIKYKGYQVPPAELEHILQSRPEIADAAVVPYPDEEAGQLPMAFVVRQPGAYLTEQQVMNCVAKHVAPYKKVRRVAFVNAIPKSPAGKILRREL 587          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL5_ARATH (4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.515e-42
Identity = 87/182 (47.80%), Postives = 123/182 (67.58%), Query Frame = -3
Query:  186 GSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASS 731
            G+ G +  + E +++D   G  L     GE+ ++GP IMKGY ++ EAT++ +D EGWL T               DR+KE+IK+KG+QV P+E+EALLL+HP I DAAV+P  D+  G+ P+A+VVR  G  L+E+ I E++AKQV  YKR+ K+ FV +IPK+PSGKILRKDL  K+A+S
Sbjct:  362 GTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVIPFPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKILRKDL-IKIATS 542          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL9_ARATH (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.314e-41
Identity = 84/177 (47.46%), Postives = 118/177 (66.67%), Query Frame = -3
Query:  207 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDL 737
            K GS G +  N E K++D   G SLP    GE+ +RGP IMKGY+ + +A+A  +D EGWL T               DR+KE+IK+K +QVPP E+E +L S+P + DAAVVP  DE AGE+P+AF+VR  G  L E  I +++AKQV  YK++ ++ F++AIPK+P+GKILR++L
Sbjct:  374 KYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEKASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPVELEQILHSNPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRRVAFINAIPKNPAGKILRREL 550          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL7_ORYSJ (4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 83/175 (47.43%), Postives = 112/175 (64.00%), Query Frame = -3
Query:  207 GSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDL 731
            GS G V  N E+K++DH  G  LP   +GE+ +RGP +M GY+ D EA A   + EGWL T               DR+KE+IK+K +QVPP+E+E +L S P I DAAV+P   E AG++PVA VV+  G +L E  +   +AKQV  YK++ K+ FV +IPKSPSGKILR++L
Sbjct:  372 GSAGRVTENVEVKIVDHVTGKPLPAGQQGELWVRGPAVMTGYVGDNEANATTFNSEGWLKTGDLCYIDQDGFLFVVDRLKELIKYKAYQVPPAELELVLHSLPQIVDAAVMPYPHEEAGQIPVALVVKQPGSKLTEAEVMYNVAKQVAPYKKIRKVLFVDSIPKSPSGKILRREL 546          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL6_ARATH (4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 85/182 (46.70%), Postives = 120/182 (65.93%), Query Frame = -3
Query:  183 SCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSM 728
            S G +  N + KV+D   G+ LP  +RGE+ I+GP +MKGYLN+P+AT   I  + WL T               DR+KEIIK+KGFQ+ P+++EA+L+SHP I DAAV    +E  GE+PVAFVVR     L+EE +  Y+A QV  Y+++ K+  V++IPKSP+GKILRK+L+  L +S+
Sbjct:  381 SVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQMSIVEDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEAVLVSHPLIIDAAVTAAPNEECGEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKELKRILTNSV 562          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL4_ARATH (4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.236e-40
Identity = 82/182 (45.05%), Postives = 123/182 (67.58%), Query Frame = -3
Query:  186 GSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASS 731
            G+ GT+  + E +++D   G  +  N  GE+ ++GP I KGY  + EAT   I++EGWL T               DR+KE+IK+KG+QVPP+E+EALL++HP I DAAV+P  D+ AG+ P+A+VVR +   L+E+ + ++I+KQV  YK++ K+ F+++IPK+ SGK LRKDL  KLA+S
Sbjct:  368 GTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEATNETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEALLITHPDILDAAVIPFPDKEAGQYPMAYVVRKHESNLSEKQVIDFISKQVAPYKKIRKVSFINSIPKTASGKTLRKDL-IKLATS 548          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL2_ARATH (4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.226e-40
Identity = 87/182 (47.80%), Postives = 119/182 (65.38%), Query Frame = -3
Query:  186 GSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASS 731
            G+ G +  N E K++D + G  L  N  GE+ IR P +MKGY  + EATA+ ID EGWL T               DR+KE+IK  G+QV P+E+EALLL+HP IADAAV+P  D  AG+ P+A++VR  G  L+E  I  ++AKQV  YK++ K+ F+ +IPK+PSGKILR++L  KL +S
Sbjct:  383 GASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKGYFKNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEALLLAHPEIADAAVIPIPDMKAGQYPMAYIVRKVGSNLSESEIMGFVAKQVSPYKKIRKVTFLASIPKNPSGKILRREL-TKLTTS 563          
The following BLAST results are available for this feature:
BLAST of CF834687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
4CLL1_ORYSJ1.833e-4349.454-coumarate--CoA ligase-like 1 OS=Oryza sativa sub... [more]
4CLL4_ORYSJ2.027e-4247.254-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]
4CLL9_ORYSJ2.647e-4248.654-coumarate--CoA ligase-like 9 OS=Oryza sativa sub... [more]
4CLL6_ORYSJ3.457e-4249.714-coumarate--CoA ligase-like 6 OS=Oryza sativa sub... [more]
4CLL5_ARATH4.515e-4247.804-coumarate--CoA ligase-like 5 OS=Arabidopsis thal... [more]
4CLL9_ARATH1.314e-4147.464-coumarate--CoA ligase-like 9 OS=Arabidopsis thal... [more]
4CLL7_ORYSJ1.112e-4047.434-coumarate--CoA ligase-like 7 OS=Oryza sativa sub... [more]
4CLL6_ARATH1.112e-4046.704-coumarate--CoA ligase-like 6 OS=Arabidopsis thal... [more]
4CLL4_ARATH3.236e-4045.054-coumarate--CoA ligase-like 4 OS=Arabidopsis thal... [more]
4CLL2_ARATH4.226e-4047.804-coumarate--CoA ligase-like 2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834687 ID=CF834687; Name=CF834687; organism=Citrus sinensis; type=EST; length=739bp
ATAAGAATTATTAATTTTACCAAAATTTATTACAATAACCCTTTGGAAAA
CTACTCATCAGAATTACATATTACAAGCAAACATGATAATTTTTTTTGTC
ACACCATTTGAAGTTCTTGAATGCCAACAACTCAAAGGCGAACAAAAACT
AACGCAATAAATAAGAAGAATTAATTCAAGGGCATTGAAGAGGCCAGCTT
GGCTCTGAGATCTTTCCTCAAAATCTTACCGGAAGGAGATTTTGGAATCG
CATGAACAAAATAAATCTTGGGCAGTCTCTTGTAAAACACTACCTGTTTT
GCTATGTATTCTTTAATGGCTTCCTCGGCAAGTTCAAACCCATTTGATCG
AACTACAAATGCAACTGGAACTTCTCCTGCAACTTCATCTTTTTGCGGAA
CCACAGCTGCATCTGCAATTGATGGGTGGCTTAAAAGGAGGGCTTCAATC
TCCGACGGCGGCACCTGGAATCCTTTGAATTTGATGATTTCCTTGACCCT
ATCGACTATGAAAACCTCATCATCATCATCAACAAAGCCTATGTCACCAG
TATGAAGCCAACCCTCAACGTCTATAATTGCCGCAGTTGCCTCAGGATCA
TTCAAGTAACCTTTCATAATTTGAGGGCCGCGGATGCAAATTTCGCCACG
ATGATTGTGGGGAAGGGAGGCACCAACTTCATGGTCAATAACTTTGAGCT
CAGCATTTCTAACAACCGTGCCACATGATCCTGACTTTG
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