CF834687

Overview
NameCF834687
Unique NameCF834687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834687_ssr517 microsatellite CF834687_ssr517:517..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.230e-39
Identity = 85/183 (46.45%), Postives = 115/183 (62.84%), Query Frame = -3
Query:  189 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLAS 737
            K  S G ++ N E+K ID + G SLP N  GE+C+R   +M+GY  + E T   ID +GWLHT               DR+KE+IK+KGFQV P+E+EA+LL+HPS+ D AVVP  DE AGE+P A VV +      EE I  ++A  V  YK++  ++FV +IPKS SGKI+R+ LR K+ S
Sbjct:  356 KRNSVGFILPNLEVKFIDPDTGRSLPKNTSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVPLPDEEAGEIPAACVVINPKATEKEEDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRRLLRDKILS 538          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LUCI_LUCCR (Luciferin 4-monooxygenase OS=Luciola cruciata PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.564e-37
Identity = 83/179 (46.37%), Postives = 113/179 (63.13%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRL-PKIYFVHAIPKSPSGKILRKDLR 737
            K G+ G VV   + KVID +   SL  N RGE+C++GP +MKGY+N+PEAT  +ID EGWLHT               DR+K +IK+KG+QVPP+E+E++LL HPSI DA V    D VAGE+P A VV  +G  + E+ + +Y+A QV   KRL   + FV  +PK  +GKI  + +R
Sbjct:  360 KPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIR 538          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL3_ARATH (4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.662e-36
Identity = 78/184 (42.39%), Postives = 117/184 (63.59%), Query Frame = -3
Query:  186 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASS 737
            K G+ G +    E +++D + G  +  N  GE+ ++GP I KGY  + EAT   I++EGWL                 DR+KE+IK+KG+QVPP+E+EALL++HP I DAAV+P  D  AG+ P+A+V R     L+E+ + ++I+ QV  YK++ K+ F+ +IPK+ SGK LRKDL  KL++S
Sbjct:  368 KYGAVGLLSSGIEARIVDPDTGRVMGVNQPGELWLKGPSISKGYFGNEEATNETINLEGWLKLGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEALLIAHPHILDAAVIPFPDREAGQYPMAYVARKPESNLSEKEVIDFISNQVAPYKKIRKVAFISSIPKTASGKTLRKDL-IKLSTS 550          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LUCI_PHOPY (Luciferin 4-monooxygenase OS=Photinus pyralis PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 79/179 (44.13%), Postives = 113/179 (63.13%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRL-PKIYFVHAIPKSPSGKILRKDLR 737
            K G+ G VV   E KV+D + G +L  N RGE+C+RGP IM GY+N+PEAT A+ID +GWLH+               DR+K +IK+KG+QV P+E+E++LL HP+I DA V    D+ AGE+P A VV  +G  + E+ I +Y+A QV   K+L   + FV  +PK  +GK+  + +R
Sbjct:  358 KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LUCI_LUCLA (Luciferin 4-monooxygenase OS=Luciola lateralis PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 81/179 (45.25%), Postives = 112/179 (62.57%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRL-PKIYFVHAIPKSPSGKILRKDLR 737
            K G+ G VV   + KVID +   +L  N RGE+C++GP +MKGY+++PEAT  IID EGWLHT               DR+K +IK+KG+QVPP+E+E++LL HP+I DA V    D +AGE+P A VV   G  + E+ + +Y+A QV   KRL   + FV  +PK  +GKI  K +R
Sbjct:  360 KPGASGKVVPLFKAKVIDLDTKKTLGPNRRGEVCVKGPMLMKGYVDNPEATREIIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPIAGELPGAVVVLEKGKSMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGKAIR 538          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL8_ARATH (4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 8.247e-36
Identity = 77/175 (44.00%), Postives = 110/175 (62.86%), Query Frame = -3
Query:  207 GSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDL 731
            G+ G +    E +++D   G  +  N  GE+ ++GP I KGY  + E    II  EGWL T               DR+KE+IK+KG+QVPP+E+EALLL+HP I DAAV+P  D+ AG+ P+A+V R     L E+ + ++I+KQV  YK++ K+ F+ +IPK+PSGK LRKDL
Sbjct:  371 GAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYFRNEEE---IITSEGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPPAELEALLLNHPDILDAAVIPFPDKEAGQFPMAYVARKPESNLCEKKVIDFISKQVAPYKKIRKVAFIDSIPKTPSGKTLRKDL 542          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL3_ORYSJ (4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica GN=4CLL3 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.247e-36
Identity = 79/178 (44.38%), Postives = 107/178 (60.11%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 737
            K  S G +  N   K++  E  + LP    GE+ + GP IMKGYL+D +      D  GWL T                R+K+ IK+KGFQ+ P ++E +L+ HP I D AV   +DE AGE+PVAFVVR +G  L+ + + EY+AKQV  YKR+ K+ FV AIPKSP+GK+LR+ LR
Sbjct:  397 KYTSVGLLAPNMHAKIVHLESSSCLPPGFSGELWLHGPGIMKGYLSDDDDACTRKD--GWLRTGDIAYFDLDGYLYIVGRLKDTIKYKGFQIAPGDLEEVLIHHPEILDVAVTSAEDEEAGEIPVAFVVRRSGSNLSCKQVMEYVAKQVAPYKRVRKVVFVEAIPKSPAGKVLRRLLR 572          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL5_ORYSJ (4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = -3
Query:  207 GYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDL 611
            GY+ D EATAA +D EGWL T               DR+KE+IK+KG+QVPP+E+E +L SHP IADAAV+P  DE AGE+P+AF+VR  G  + +E + +Y+AKQV  YK++ ++ FV AIPKSP+GKILR++L
Sbjct:  396 GYVGDDEATAATVDSEGWLKTGDLCYFNEDGFLYIVDRLKELIKYKGYQVPPAELEHILQSHPGIADAAVIPYPDEEAGELPMAFIVRQPGSNITKEQVMDYVAKQVAPYKKVRRVAFVTAIPKSPAGKILRREL 530          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LUCI_LUCMI (Luciferin 4-monooxygenase OS=Luciola mingrelica PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.134e-35
Identity = 82/179 (45.81%), Postives = 110/179 (61.45%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRL-PKIYFVHAIPKSPSGKILRKDLR 737
            K G+ G VV   ++KVID +   +L  N RGEIC++GP +M GY N+PEAT   ID EGWLHT               DR+K +IK+KG+QVPP+E+E++LL HP+I DA V    D  AGE+P A VV   G  + E+ I +Y+  QVV +KRL   + FV  +PK  +GKI  K +R
Sbjct:  360 KPGASGKVVPLFKVKVIDLDTKKTLGVNRRGEICVKGPSLMLGYSNNPEATRETIDEEGWLHTGDIGYYDEDEHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPDAGELPGAVVVMEKGKTMTEKEIVDYVNSQVVNHKRLRGGVRFVDEVPKGLTGKIDAKVIR 538          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL3_DICDI (Probable 4-coumarate--CoA ligase 3 OS=Dictyostelium discoideum GN=4cl3 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 81/179 (45.25%), Postives = 109/179 (60.89%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRL-PKIYFVHAIPKSPSGKILRKDLR 737
            KSGS GT++ N   K+I  E G +L    +GEICI+GP +M GY N+ +AT  +ID +G+L T               DR KE+IK KGFQVPP+E+EALLLSHP +ADA VV       GEVP  FVV      L E+ + ++   ++  YK     I+F+ AIPKS +GK+LRK+L+
Sbjct:  366 KSGSSGTLLPNLLAKIISSETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYFFIIDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLK 544          
The following BLAST results are available for this feature:
BLAST of CF834687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
4CLL1_ARATH1.230e-3946.454-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
LUCI_LUCCR2.564e-3746.37Luciferin 4-monooxygenase OS=Luciola cruciata PE=1... [more]
4CLL3_ARATH1.662e-3642.394-coumarate--CoA ligase-like 3 OS=Arabidopsis thal... [more]
LUCI_PHOPY2.170e-3644.13Luciferin 4-monooxygenase OS=Photinus pyralis PE=1... [more]
LUCI_LUCLA2.170e-3645.25Luciferin 4-monooxygenase OS=Luciola lateralis PE=... [more]
4CLL8_ARATH8.247e-3644.004-coumarate--CoA ligase-like 8 OS=Arabidopsis thal... [more]
4CLL3_ORYSJ8.247e-3644.384-coumarate--CoA ligase-like 3 OS=Oryza sativa sub... [more]
4CLL5_ORYSJ1.837e-3553.334-coumarate--CoA ligase-like 5 OS=Oryza sativa sub... [more]
LUCI_LUCMI3.134e-3545.81Luciferin 4-monooxygenase OS=Luciola mingrelica PE... [more]
4CL3_DICDI1.191e-3445.25Probable 4-coumarate--CoA ligase 3 OS=Dictyosteliu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834687 ID=CF834687; Name=CF834687; organism=Citrus sinensis; type=EST; length=739bp
ATAAGAATTATTAATTTTACCAAAATTTATTACAATAACCCTTTGGAAAA
CTACTCATCAGAATTACATATTACAAGCAAACATGATAATTTTTTTTGTC
ACACCATTTGAAGTTCTTGAATGCCAACAACTCAAAGGCGAACAAAAACT
AACGCAATAAATAAGAAGAATTAATTCAAGGGCATTGAAGAGGCCAGCTT
GGCTCTGAGATCTTTCCTCAAAATCTTACCGGAAGGAGATTTTGGAATCG
CATGAACAAAATAAATCTTGGGCAGTCTCTTGTAAAACACTACCTGTTTT
GCTATGTATTCTTTAATGGCTTCCTCGGCAAGTTCAAACCCATTTGATCG
AACTACAAATGCAACTGGAACTTCTCCTGCAACTTCATCTTTTTGCGGAA
CCACAGCTGCATCTGCAATTGATGGGTGGCTTAAAAGGAGGGCTTCAATC
TCCGACGGCGGCACCTGGAATCCTTTGAATTTGATGATTTCCTTGACCCT
ATCGACTATGAAAACCTCATCATCATCATCAACAAAGCCTATGTCACCAG
TATGAAGCCAACCCTCAACGTCTATAATTGCCGCAGTTGCCTCAGGATCA
TTCAAGTAACCTTTCATAATTTGAGGGCCGCGGATGCAAATTTCGCCACG
ATGATTGTGGGGAAGGGAGGCACCAACTTCATGGTCAATAACTTTGAGCT
CAGCATTTCTAACAACCGTGCCACATGATCCTGACTTTG
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