CF834687

Overview
NameCF834687
Unique NameCF834687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834687_ssr517 microsatellite CF834687_ssr517:517..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL1_DICDI (Probable 4-coumarate--CoA ligase 1 OS=Dictyostelium discoideum GN=4cl1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.910e-34
Identity = 80/179 (44.69%), Postives = 108/179 (60.34%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRL-PKIYFVHAIPKSPSGKILRKDLR 737
            KSGS G ++ N   K+I  E G +L    +GEICI+GP +M GY N+ +AT  +ID +G+L T               DR KE+IK KGFQVPP+E+EALLLSHP +ADA VV       GEVP  FVV      L E+ + ++   ++  YK     I+F+ AIPKS +GK+LRK+L+
Sbjct:  366 KSGSAGILLPNQLAKIISPETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYYFIVDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLK 544          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL2_DICDI (Probable 4-coumarate--CoA ligase 2 OS=Dictyostelium discoideum GN=4cl2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.008e-33
Identity = 79/179 (44.13%), Postives = 108/179 (60.34%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRL-PKIYFVHAIPKSPSGKILRKDLR 737
            KSGS G ++ N  +K+I  E G +L    +GEICI+GP +M GY N+ +AT  +ID +G+  T               DR KE+IK KGFQVPP+E+EALLLSHP +ADA VV       GEVP  FVV      L E+ + ++   ++  YK     I+F+ AIPKS +GK+LRK+L+
Sbjct:  366 KSGSAGILLPNQLVKIISPETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFFKTGDIGYVDEDGYYFIVDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLK 544          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL8_ORYSJ (Putative 4-coumarate--CoA ligase-like 8 OS=Oryza sativa subsp. japonica GN=4CLL8 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 78/194 (40.21%), Postives = 114/194 (58.76%), Query Frame = -3
Query:  183 SCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATA-AIIDVEG----------WLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGF-ELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSM 728
            S G ++ + E K++D + G  LP    GE+ +RGP  M+GYLN+ EATA A++   G          WL T               DRVKE+IK   +QV P+E+E +L +HP I DAAV P  D+ AGE+P+A+VV+  G   L E+ +  ++  +V  YK++ K+ FV +IP+SPSGKILR+ L+  L  S+
Sbjct:  410 SIGRLMPDVEAKIVDPDSGELLPPRRTGELWVRGPSTMRGYLNNEEATALALVAAAGSVSVSGGGERWLRTGDLCYVDSRGLVYVVDRVKELIKCNAYQVAPAELEDVLATHPDIHDAAVAPYPDKEAGEIPMAYVVKKQGSGHLQEDEVISFVQNKVAPYKKIRKVVFVDSIPRSPSGKILRRQLKNLLQGSI 603          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LUCI_PHOPE (Luciferin 4-monooxygenase OS=Photuris pennsylvanica PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 75/179 (41.90%), Postives = 101/179 (56.42%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRL-PKIYFVHAIPKSPSGKILRKDLR 737
            + GS G +V    +KV+D   G  L  N  GE+  +G  IMK Y N+ EAT AII+ +GWL +               DR+K +IK+KG+QV P+EIE +LL HP I DA V    DE AGE+P A VV   G  L E+ ++ +++ QV   K L   + F+  IPK  +GKI RK LR
Sbjct:  357 RPGSTGKIVPFHAVKVVDPTTGKILGPNETGELYFKGDMIMKSYYNNEEATKAIINKDGWLRSGDIAYYDNDGHFYIVDRLKSLIKYKGYQVAPAEIEGILLQHPYIVDAGVTGIPDEAAGELPAAGVVVQTGKYLNEQIVQNFVSSQVSTAKWLRGGVKFLDEIPKGSTGKIDRKVLR 535          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CLL2_ORYSJ (4-coumarate--CoA ligase-like 2 OS=Oryza sativa subsp. japonica GN=4CLL2 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25
Identity = 64/155 (41.29%), Postives = 87/155 (56.13%), Query Frame = -3
Query:  291 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMK------GYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQV 737
            K  S G +  N   K++  E G+ LP    GE+ + GP IMK      GYLND +   A    +GWL T                R+K+ IK+KGFQ+ P+++EA+L+ HP I D AV   +DE AGE+PVAFVVR +G  L+   + EY+AKQV
Sbjct:  370 KYASVGLLAPNMHAKIVHLESGSCLPPGSYGELWLHGPAIMKEFCFVTGYLNDDDD--AFTRKDGWLRTGDIAYFDSDGYLFIVGRLKDTIKYKGFQIAPADLEAVLIRHPEIIDVAVTSDEDEEAGEIPVAFVVRKSGSTLSCTHVMEYVAKQV 522          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: MENE_BACCN (2-succinylbenzoate--CoA ligase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=menE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.545e-24
Identity = 64/181 (35.36%), Postives = 103/181 (56.91%), Query Frame = -3
Query:  195 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKL 737
            K GS G  +   +L++   + G  +P N  GEI ++GP + +GY    +AT   I V+GWLHT               DR  ++I   G  + P++IE +LLSHP + +A VV + DE  G+VPVAFVV++   ++ EE +  +  +++  YK    +YF+H +P++ S K+LR++LR  L
Sbjct:  303 KVGSAGKPLFPCQLRI--EKDGKVMPANVEGEIVVKGPNVTRGYFKREDATRETI-VDGWLHTGDLGYVDDEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPLVLEAGVVGKSDETWGQVPVAFVVKAG--QVTEEEMIHFCEEKLAKYKVPKAVYFLHELPRNASKKLLRRELRQLL 478          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23
Identity = 65/177 (36.72%), Postives = 95/177 (53.67%), Query Frame = -3
Query:  204 SGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 734
            SGS G  V + E K++D +    +P    GE+C++GPQ+M GY   P+AT  II   GWLHT               DR K++I   GF V P+EIE +++ HP + + A V      +GE    FVV+ +   L EE++  +  +Q+  YK    + F   +PKS  GKILR++LR
Sbjct:  377 SGSIGLPVPSTEAKLVDDDDN-EVPPGQPGELCVKGPQVMLGYWQRPDATDEIIK-NGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDP-SLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELR 550          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LCFA_ECOL6 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23
Identity = 65/177 (36.72%), Postives = 95/177 (53.67%), Query Frame = -3
Query:  204 SGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 734
            SGS G  V + E K++D +    +P    GE+C++GPQ+M GY   P+AT  II   GWLHT               DR K++I   GF V P+EIE +++ HP + + A V      +GE    FVV+ +   L EE++  +  +Q+  YK    + F   +PKS  GKILR++LR
Sbjct:  377 SGSIGLPVPSTEAKLVDDDDN-EVPPGQPGELCVKGPQVMLGYWQRPDATDEIIK-NGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDP-SLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELR 550          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.130e-23
Identity = 66/177 (37.29%), Postives = 94/177 (53.11%), Query Frame = -3
Query:  204 SGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 734
            SGS G  V + E K++D +     P    GE+C+RGPQ+M GY   P+AT  II   GWLHT               DR K++I   GF V P+EIE +++ HP + + A V      +GE    FVV+ +   L EE++  +  +Q+  YK    + F   +PKS  GKILR++LR
Sbjct:  377 SGSIGLPVPSTEAKLVDDDDNEVSP-GQPGELCVRGPQVMLGYWQRPDATDEIIK-NGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDP-SLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELR 550          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 64/178 (35.96%), Postives = 95/178 (53.37%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 737
            K GS GT + + E KV+D  +G  LP +  GE+ ++GP +MKGY   P  T   +  +GWL+T               DR K++I   G+ V P E+E +L SHP + +A V+   D  +GE    +VV      + EE I ++  K +  YKR   I F+  IPK+ +GK+LR+ LR
Sbjct:  334 KPGSIGTSILHVENKVVD-PLGRELPAHQVGELIVKGPNVMKGYYKMPMETEHALK-DGWLYTGDLARRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPKRS-GVTEEDIMQHCEKHLAKYKRPAAITFLDDIPKNATGKMLRRALR 508          
The following BLAST results are available for this feature:
BLAST of CF834687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
4CL1_DICDI5.910e-3444.69Probable 4-coumarate--CoA ligase 1 OS=Dictyosteliu... [more]
4CL2_DICDI1.008e-3344.13Probable 4-coumarate--CoA ligase 2 OS=Dictyosteliu... [more]
4CLL8_ORYSJ8.535e-3340.21Putative 4-coumarate--CoA ligase-like 8 OS=Oryza s... [more]
LUCI_PHOPE5.725e-2941.90Luciferin 4-monooxygenase OS=Photuris pennsylvanic... [more]
4CLL2_ORYSJ2.251e-2541.294-coumarate--CoA ligase-like 2 OS=Oryza sativa sub... [more]
MENE_BACCN5.545e-2435.362-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
LCFA_ECOLI4.694e-2336.72Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECOL64.694e-2336.72Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECO576.130e-2337.29Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFB_BACSU3.043e-2235.96Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834687 ID=CF834687; Name=CF834687; organism=Citrus sinensis; type=EST; length=739bp
ATAAGAATTATTAATTTTACCAAAATTTATTACAATAACCCTTTGGAAAA
CTACTCATCAGAATTACATATTACAAGCAAACATGATAATTTTTTTTGTC
ACACCATTTGAAGTTCTTGAATGCCAACAACTCAAAGGCGAACAAAAACT
AACGCAATAAATAAGAAGAATTAATTCAAGGGCATTGAAGAGGCCAGCTT
GGCTCTGAGATCTTTCCTCAAAATCTTACCGGAAGGAGATTTTGGAATCG
CATGAACAAAATAAATCTTGGGCAGTCTCTTGTAAAACACTACCTGTTTT
GCTATGTATTCTTTAATGGCTTCCTCGGCAAGTTCAAACCCATTTGATCG
AACTACAAATGCAACTGGAACTTCTCCTGCAACTTCATCTTTTTGCGGAA
CCACAGCTGCATCTGCAATTGATGGGTGGCTTAAAAGGAGGGCTTCAATC
TCCGACGGCGGCACCTGGAATCCTTTGAATTTGATGATTTCCTTGACCCT
ATCGACTATGAAAACCTCATCATCATCATCAACAAAGCCTATGTCACCAG
TATGAAGCCAACCCTCAACGTCTATAATTGCCGCAGTTGCCTCAGGATCA
TTCAAGTAACCTTTCATAATTTGAGGGCCGCGGATGCAAATTTCGCCACG
ATGATTGTGGGGAAGGGAGGCACCAACTTCATGGTCAATAACTTTGAGCT
CAGCATTTCTAACAACCGTGCCACATGATCCTGACTTTG
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