CF834687

Overview
NameCF834687
Unique NameCF834687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834687_ssr517 microsatellite CF834687_ssr517:517..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: MENE_BACWK (2-succinylbenzoate--CoA ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=menE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.972e-21
Identity = 65/185 (35.14%), Postives = 99/185 (53.51%), Query Frame = -3
Query:  183 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSM 737
            K GS G  +   +L++   + G  +P    GEI ++GP +  GY N  +AT   I   GWLHT               DR  ++I   G  + P++IE +LLSHP++ +A VV   DE  G+VP AFVV+S   ++ EE I  +  +++  YK   K  F+  +P++ S K+LR++LR KL   M
Sbjct:  303 KVGSAGKPLFQCQLRI--EKDGVVVPPRAEGEIVVKGPNVTGGYFNREDATHEAIR-NGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVVEAGVVGMADESWGQVPAAFVVKSG--DVTEEEIIRFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELR-KLVEEM 481          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: MENE_BACC7 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain AH187) GN=menE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.972e-21
Identity = 63/178 (35.39%), Postives = 96/178 (53.93%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 737
            K GS G  +    L++   + G  +P    GEI ++GP +  GY N  +AT   I   GWLHT               DR  ++I   G  + P++IE +LLSHP++A+A VV   D+  G+VP AFVV+S   E+ EE I  +  +++  YK   K  F+  +P++ S K+LR++LR
Sbjct:  303 KVGSAGKPLFQCRLRI--EKDGVVVPAFTEGEIVVKGPNVTGGYFNREDATRETIQ-NGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMTDDKWGQVPAAFVVKSG--EVTEEEIIHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELR 475          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LCFA_SALTY (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.972e-21
Identity = 62/177 (35.03%), Postives = 94/177 (53.11%), Query Frame = -3
Query:  204 SGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 734
            SGS G  V + E K++D +     P    GE+C++GPQ+M GY   P+AT  II  +GWLHT               DR K++I   GF V P+EIE +++ H  + + A V      +GE    FVV+ +   L ++A+  +  + +  YK   ++ F   +PKS  GKILR++LR
Sbjct:  377 SGSIGLPVPSTEAKLVDDDDNEVAP-GEAGELCVKGPQVMLGYWQRPDATDEIIK-DGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKKDP-ALTDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELR 550          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LCFA_SALTI (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.972e-21
Identity = 62/177 (35.03%), Postives = 94/177 (53.11%), Query Frame = -3
Query:  204 SGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 734
            SGS G  V + E K++D +     P    GE+C++GPQ+M GY   P+AT  II  +GWLHT               DR K++I   GF V P+EIE +++ H  + + A V      +GE    FVV+ +   L ++A+  +  + +  YK   ++ F   +PKS  GKILR++LR
Sbjct:  377 SGSIGLPVPSTEAKLVDDDDNEVAP-GEAGELCVKGPQVMLGYWQRPDATDEIIK-DGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKKDP-ALTDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELR 550          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: YDAB_BACSU (Putative acyl--CoA ligase ydaB OS=Bacillus subtilis GN=ydaB PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.364e-21
Identity = 59/184 (32.07%), Postives = 95/184 (51.63%), Query Frame = -3
Query:  186 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASS 737
            K+ S G  V   ++KV D   G  LP    GEI +  P + KGY ++PEATA ++   GW  T                R K++I + G  V P ++E ++   P I + AVV   D + GE P AF+V++ G  + EE +  +  +++  YK +P++ FV+ +PK+  GK+ +  LR +   S
Sbjct:  322 KAASAGKPVAGVKVKVEDPLTGEELPQGEIGEIVVHTPFLFKGYEDNPEATAKVLQ-NGWFRTGDSGYVDEDGFIFITGRYKDVIIYGGDNVYPDQVEEVIQQIPGILETAVVGIPDPLYGEKPKAFIVKNGGQRITEEDVIAFCKERLSAYK-IPEVEFVNELPKNNLGKVKKDVLRNQAVHS 503          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: MENE_BACCR (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=menE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.364e-21
Identity = 62/178 (34.83%), Postives = 96/178 (53.93%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 737
            K GS G  +   +L++   + G  +P    GEI ++GP +  GY N  +AT   I   GWLHT               DR  ++I   G  + P++IE +LLSHP++A+A VV   D+  G+VP AFVV+S    + EE I  +  +++  YK   K  F+  +P++ S K+LR++LR
Sbjct:  304 KVGSAGKPLFQCQLRI--EKDGVVVPPLVEGEIVVKGPNVTGGYFNREDATRETIQ-NGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMSDDKWGQVPAAFVVKSGA--VTEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELR 476          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: MENE_GEOKA (2-succinylbenzoate--CoA ligase OS=Geobacillus kaustophilus GN=menE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.494e-21
Identity = 64/178 (35.96%), Postives = 96/178 (53.93%), Query Frame = -3
Query:  204 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 737
            K GS G  +  AEL ++     A+ PH   GEI ++GP + KGY   PEATA  I   GW  T               DR  ++I   G  V P+E+EA+LLSHP + +A V   ++E  G+VP AFV    G    E A++ +  +++  YK   +IYFV  +P++ + K+LR++L+
Sbjct:  306 KLGSAGKPLFPAELCILKDGKPAA-PHE-AGEIVVKGPNVTKGYWQRPEATAQAIR-GGWFFTGDIGYLDEDGFLYVLDRRSDLIISGGENVYPAEVEAVLLSHPDVEEAGVTGVENETWGQVPYAFVRLKRGASPDEAALRAFCRERLAKYKVPARIYFVDELPRNAAQKLLRRELK 480          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: MENE_ENTFA (2-succinylbenzoate--CoA ligase OS=Enterococcus faecalis GN=menE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 59/176 (33.52%), Postives = 94/176 (53.41%), Query Frame = -3
Query:  216 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLND--PEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILR 737
            K GS G  +++ ++K++D E+G   P    GEI ++GP ++ GYLN   PE   A    +GW  T                R+ E+I   G  + P+E+E +L +   I  AAVV + D   G VPVA+V+      LA+  I++  ++++  YKR  +IYF H+ P++ SGKI +
Sbjct:  303 KIGSAGQPLKDMQIKIVD-ELGQEQPEKQVGEILLKGPNVVSGYLNQRQPEKWTA----DGWFKTGDMGYLDAQSYLYLVSRLSELIISGGENIYPTEVEQVLQAITGIKAAAVVGEPDAQWGAVPVAYVISDQEITLAQ--IQDQCSRKLAKYKRPKRIYFCHSFPQTASGKIAK 471          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19
Identity = 64/179 (35.75%), Postives = 90/179 (50.28%), Query Frame = -3
Query:  207 KSGSCGTVVRNAELKVIDHEVGA-SLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIY-FVHAIPKSPSGKILRKDL 737
            K GS G    + +  +   E G  + P+ H GEI ++GPQ+MKGY N PE TAA++  +GWL T               DR K+II   G+ + P E+E  L  H +I +  V    D   GE   AFVV   G +   E +  +   ++  YK +PK Y F   +PK+  GKILR+ L
Sbjct:  374 KPGSIGCPWPSTDAAIYSEETGELAAPYEH-GEIIVKGPQVMKGYWNKPEETAAVLR-DGWLFTGDMGYMDEEGFFYIADRKKDIIIAGGYNIYPREVEEALYEHEAIQEIVVAGVPDSYRGETVKAFVVLKKGAKADTEELDAFARSRLAPYK-VPKAYEFRKELPKTAVGKILRRRL 549          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: FADK_ECOLI (Short-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadK PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19
Identity = 63/186 (33.87%), Postives = 91/186 (48.92%), Query Frame = -3
Query:  183 GTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVV-RSNGFELA-EEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKI----LRKDLRAKLASSM 722
            G      E+KV+D +   +LP    GE   RGP +  GY ++PE TA  +D EGW ++                R K+II   G  +   E+E +LL HP I DA VV   DE  GE   A+VV ++    L+ EE +  +  K+V  YK    I  +  +P++ SGKI    LRKD+  +L   +
Sbjct:  359 GYAAAGVEIKVVD-DARKTLPPGCEGEEASRGPNVFMGYFDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMSDERLGERSCAYVVLKAPHHSLSLEEVVAFFSRKRVAKYKYPEHIVVIEKLPRTTSGKIQKFLLRKDIMRRLTQDV 543          
The following BLAST results are available for this feature:
BLAST of CF834687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
MENE_BACWK1.972e-2135.142-succinylbenzoate--CoA ligase OS=Bacillus weihens... [more]
MENE_BACC71.972e-2135.392-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
LCFA_SALTY1.972e-2135.03Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_SALTI1.972e-2135.03Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
YDAB_BACSU3.364e-2132.07Putative acyl--CoA ligase ydaB OS=Bacillus subtili... [more]
MENE_BACCR3.364e-2134.832-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_GEOKA7.494e-2135.962-succinylbenzoate--CoA ligase OS=Geobacillus kaus... [more]
MENE_ENTFA6.344e-2033.522-succinylbenzoate--CoA ligase OS=Enterococcus fae... [more]
LCFA_BACSU1.413e-1935.75Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
FADK_ECOLI1.413e-1933.87Short-chain-fatty-acid--CoA ligase OS=Escherichia ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05P12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834687 ID=CF834687; Name=CF834687; organism=Citrus sinensis; type=EST; length=739bp
ATAAGAATTATTAATTTTACCAAAATTTATTACAATAACCCTTTGGAAAA
CTACTCATCAGAATTACATATTACAAGCAAACATGATAATTTTTTTTGTC
ACACCATTTGAAGTTCTTGAATGCCAACAACTCAAAGGCGAACAAAAACT
AACGCAATAAATAAGAAGAATTAATTCAAGGGCATTGAAGAGGCCAGCTT
GGCTCTGAGATCTTTCCTCAAAATCTTACCGGAAGGAGATTTTGGAATCG
CATGAACAAAATAAATCTTGGGCAGTCTCTTGTAAAACACTACCTGTTTT
GCTATGTATTCTTTAATGGCTTCCTCGGCAAGTTCAAACCCATTTGATCG
AACTACAAATGCAACTGGAACTTCTCCTGCAACTTCATCTTTTTGCGGAA
CCACAGCTGCATCTGCAATTGATGGGTGGCTTAAAAGGAGGGCTTCAATC
TCCGACGGCGGCACCTGGAATCCTTTGAATTTGATGATTTCCTTGACCCT
ATCGACTATGAAAACCTCATCATCATCATCAACAAAGCCTATGTCACCAG
TATGAAGCCAACCCTCAACGTCTATAATTGCCGCAGTTGCCTCAGGATCA
TTCAAGTAACCTTTCATAATTTGAGGGCCGCGGATGCAAATTTCGCCACG
ATGATTGTGGGGAAGGGAGGCACCAACTTCATGGTCAATAACTTTGAGCT
CAGCATTTCTAACAACCGTGCCACATGATCCTGACTTTG
back to top