CF834687

Overview
NameCF834687
Unique NameCF834687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECOBW (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain K12 / BW2952) GN=caiC PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3 
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
[Close]
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_SHISS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella sonnei (strain Ss046) GN=caiC PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3 
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
[Close]
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_SHIFL (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri GN=caiC PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3 
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
[Close]
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSM (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3 
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
[Close]
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSE (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SE11) GN=caiC PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3 
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
[Close]
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECOHS (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O9:H4 (strain HS) GN=caiC PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3 
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
[Close]
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECO7I (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3 
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFADRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
[Close]
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECO5E (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3 
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
[Close]
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECO57 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 GN=caiC PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3 
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
[Close]
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECO55 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3 
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
The following BLAST results are available for this feature:
BLAST of CF834687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
CAIC_ECOBW1.463e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_SHISS1.910e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_SHIFL1.910e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECOSM1.910e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOSE1.910e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOHS1.910e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO7I1.910e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO5E1.910e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO571.910e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO551.910e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834687 ID=CF834687; Name=CF834687; organism=Citrus sinensis; type=EST; length=739bp
ATAAGAATTATTAATTTTACCAAAATTTATTACAATAACCCTTTGGAAAA
CTACTCATCAGAATTACATATTACAAGCAAACATGATAATTTTTTTTGTC
ACACCATTTGAAGTTCTTGAATGCCAACAACTCAAAGGCGAACAAAAACT
AACGCAATAAATAAGAAGAATTAATTCAAGGGCATTGAAGAGGCCAGCTT
GGCTCTGAGATCTTTCCTCAAAATCTTACCGGAAGGAGATTTTGGAATCG
CATGAACAAAATAAATCTTGGGCAGTCTCTTGTAAAACACTACCTGTTTT
GCTATGTATTCTTTAATGGCTTCCTCGGCAAGTTCAAACCCATTTGATCG
AACTACAAATGCAACTGGAACTTCTCCTGCAACTTCATCTTTTTGCGGAA
CCACAGCTGCATCTGCAATTGATGGGTGGCTTAAAAGGAGGGCTTCAATC
TCCGACGGCGGCACCTGGAATCCTTTGAATTTGATGATTTCCTTGACCCT
ATCGACTATGAAAACCTCATCATCATCATCAACAAAGCCTATGTCACCAG
TATGAAGCCAACCCTCAACGTCTATAATTGCCGCAGTTGCCTCAGGATCA
TTCAAGTAACCTTTCATAATTTGAGGGCCGCGGATGCAAATTTCGCCACG
ATGATTGTGGGGAAGGGAGGCACCAACTTCATGGTCAATAACTTTGAGCT
CAGCATTTCTAACAACCGTGCCACATGATCCTGACTTTG
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