CF834700 | Citrus Genome Database

Overview


Name	CF834700
Unique Name	CF834700
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	461

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6352	contig	Csv1_Contig6352:1478..1934.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PLAOC (Photosystem I assembly protein ycf3 OS=Platanus occidentalis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1

Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117

[Close]

BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PHAVU (Photosystem I assembly protein ycf3 OS=Phaseolus vulgaris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1

Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117

[Close]

BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PANGI (Photosystem I assembly protein ycf3 OS=Panax ginseng GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1

Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117

[Close]

BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_OENEH (Photosystem I assembly protein ycf3 OS=Oenothera elata subsp. hookeri GN=ycf3 PE=3 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1

Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117

[Close]

BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_NICTO (Photosystem I assembly protein ycf3 OS=Nicotiana tomentosiformis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1

Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117

[Close]

BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_NICSY (Photosystem I assembly protein ycf3 OS=Nicotiana sylvestris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1

Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117

[Close]

BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_LACSA (Photosystem I assembly protein ycf3 OS=Lactuca sativa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1

Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117

[Close]

BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_HELAN (Photosystem I assembly protein ycf3 OS=Helianthus annuus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1

Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117

[Close]

BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_GOSHI (Photosystem I assembly protein ycf3 OS=Gossypium hirsutum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1

Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117

[Close]

BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_GOSBA (Photosystem I assembly protein ycf3 OS=Gossypium barbadense GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1

Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117

The following BLAST results are available for this feature:

BLAST of CF834700 vs. ExPASy Swiss-Prot

BLAST of CF834700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136


Match Name	E-value	Identity	Description
YCF3_PLAOC	1.095e-38	100.00	Photosystem I assembly protein ycf3 OS=Platanus oc...	[more]
YCF3_PHAVU	1.095e-38	100.00	Photosystem I assembly protein ycf3 OS=Phaseolus v...	[more]
YCF3_PANGI	1.095e-38	100.00	Photosystem I assembly protein ycf3 OS=Panax ginse...	[more]
YCF3_OENEH	1.095e-38	100.00	Photosystem I assembly protein ycf3 OS=Oenothera e...	[more]
YCF3_NICTO	1.095e-38	100.00	Photosystem I assembly protein ycf3 OS=Nicotiana t...	[more]
YCF3_NICSY	1.095e-38	100.00	Photosystem I assembly protein ycf3 OS=Nicotiana s...	[more]
YCF3_LACSA	1.095e-38	100.00	Photosystem I assembly protein ycf3 OS=Lactuca sat...	[more]
YCF3_HELAN	1.095e-38	100.00	Photosystem I assembly protein ycf3 OS=Helianthus ...	[more]
YCF3_GOSHI	1.095e-38	100.00	Photosystem I assembly protein ycf3 OS=Gossypium h...	[more]
YCF3_GOSBA	1.095e-38	100.00	Photosystem I assembly protein ycf3 OS=Gossypium b...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_05P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF834700 ID=CF834700; Name=CF834700; organism=Citrus sinensis; type=EST; length=461bp
TTTTTTTTTTTTTTACTTTTTTCTTTCTATAGTAGAGATAGTCCCCCTTA
ATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAGAACGGATTTC
GTTCTAGTGCCCGAAAATAATATTCTAAAGCTTTTGTATGTTCTCCGTTA
CTTGTGTGGATAAGGCCTATGTTATAGAGTATATAGCTTCGATCGTAAGG
ATCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCAT
AATTGCCTTCAGATTGAGCTGACATCCGTTACGGTCGTCATTCGATTCAA
AGAATTCTCCGTTTCAAAACCGTACATGAGATGAAAATCTCATACGGCTC
CTCCTTTATGTGCATTATGAGAATAATCCATGAAATCAAAAAAGATTGAA
ATATTCTCATTATGAACTAAGTGGGGCTAATGTTTTTACAAGAAATCTCT
AGCCAACCTTC