CF834700

Overview
NameCF834700
Unique NameCF834700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6352 contig Csv1_Contig6352:1478..1934. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_SYNPX (Photosystem I assembly protein ycf3 OS=Synechococcus sp. (strain WH8102) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.592e-13
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = -1
Query:   57 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 275
            +SAQ++G+YAEAL+NY EA++LE +P DR   L N+ +I+ SNGE  +A+E Y RAL+ N   P    NM +I
Sbjct:   43 LSAQNDGDYAEALENYDEALKLEDNPTDRGETLKNMAIIYMSNGEEERAIETYRRALDENSNQPSCLKNMGLI 115          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_SYNPW (Photosystem I assembly protein ycf3 OS=Synechococcus sp. (strain WH7803) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.592e-13
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = -1
Query:   57 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 275
            +SAQ++G+YAEAL+NY E+++LE +P DR   L N+ +I+ SNGE  +AL  Y +AL+ NP  P    NM +I
Sbjct:   43 LSAQNDGDYAEALENYEESLKLEENPIDRGETLKNMAIIYMSNGEEDRALATYQKALDENPKQPSCLKNMGLI 115          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PROMM (Photosystem I assembly protein ycf3 OS=Prochlorococcus marinus (strain MIT 9313) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.631e-13
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = -1
Query:   57 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 275
            +SAQ+ G+YAEAL+NY E+++LE  P+DRS  L N+ +I+ SNG+   AL+ Y RAL++N   P    NM +I
Sbjct:   43 LSAQNAGDYAEALENYEESLKLEESPFDRSETLKNMAIIYMSNGDEDLALDTYQRALDQNSNQPSCLKNMGLI 115          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PROM4 (Photosystem I assembly protein ycf3 OS=Prochlorococcus marinus (strain MIT 9211) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.631e-13
Identity = 33/72 (45.83%), Postives = 51/72 (70.83%), Query Frame = -1
Query:   57 SAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 272
            +AQ+ G+Y+EAL+NY E+++LE +P DR   L N+ +I+ SNG+  +ALE Y +AL++NP  P    NM +I
Sbjct:   44 AAQNNGDYSEALENYEESLKLEENPVDRGETLKNMAIIYMSNGDEDRALETYVKALDQNPKQPSCLKNMGLI 115          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PROM3 (Photosystem I assembly protein ycf3 OS=Prochlorococcus marinus (strain MIT 9303) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.631e-13
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = -1
Query:   57 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 275
            +SAQ+ G+YAEAL+NY E+++LE  P+DRS  L N+ +I+ SNG+   AL+ Y RAL++N   P    NM +I
Sbjct:   43 LSAQNAGDYAEALENYEESLKLEESPFDRSETLKNMAIIYMSNGDEDLALDTYQRALDQNSNQPSCLKNMGLI 115          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PROMA (Photosystem I assembly protein ycf3 OS=Prochlorococcus marinus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.002e-12
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = -1
Query:   57 SAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 272
            +AQ+ G+Y+EAL+NY E+++LE +  DR   L N+ +I+ SNG+  KAL+ Y +ALE+NP  P    NM +I
Sbjct:   44 AAQNNGDYSEALENYEESLKLEENAIDRGETLKNMAIIYMSNGDEDKALDTYQKALEQNPKQPSCLKNMGLI 115          
The following BLAST results are available for this feature:
BLAST of CF834700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_SYNPX1.592e-1349.32Photosystem I assembly protein ycf3 OS=Synechococc... [more]
YCF3_SYNPW1.592e-1347.95Photosystem I assembly protein ycf3 OS=Synechococc... [more]
YCF3_PROMM4.631e-1347.95Photosystem I assembly protein ycf3 OS=Prochloroco... [more]
YCF3_PROM44.631e-1345.83Photosystem I assembly protein ycf3 OS=Prochloroco... [more]
YCF3_PROM34.631e-1347.95Photosystem I assembly protein ycf3 OS=Prochloroco... [more]
YCF3_PROMA3.002e-1245.83Photosystem I assembly protein ycf3 OS=Prochloroco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834700 ID=CF834700; Name=CF834700; organism=Citrus sinensis; type=EST; length=461bp
TTTTTTTTTTTTTTACTTTTTTCTTTCTATAGTAGAGATAGTCCCCCTTA
ATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAGAACGGATTTC
GTTCTAGTGCCCGAAAATAATATTCTAAAGCTTTTGTATGTTCTCCGTTA
CTTGTGTGGATAAGGCCTATGTTATAGAGTATATAGCTTCGATCGTAAGG
ATCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCAT
AATTGCCTTCAGATTGAGCTGACATCCGTTACGGTCGTCATTCGATTCAA
AGAATTCTCCGTTTCAAAACCGTACATGAGATGAAAATCTCATACGGCTC
CTCCTTTATGTGCATTATGAGAATAATCCATGAAATCAAAAAAGATTGAA
ATATTCTCATTATGAACTAAGTGGGGCTAATGTTTTTACAAGAAATCTCT
AGCCAACCTTC
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