CF834700

Overview
NameCF834700
Unique NameCF834700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6352 contig Csv1_Contig6352:1478..1934. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_ACOAM (Photosystem I assembly protein ycf3 OS=Acorus americanus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.522e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_BUXMI (Photosystem I assembly protein ycf3 OS=Buxus microphylla GN=ycf3 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.599e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY RALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYSRALERNPFLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_NYMAL (Photosystem I assembly protein ycf3 OS=Nymphaea alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 6.007e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMR EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA NNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQASNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_NUPAD (Photosystem I assembly protein ycf3 OS=Nuphar advena GN=ycf3 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 6.007e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMR EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA NNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQASNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_DIOEL (Photosystem I assembly protein ycf3 OS=Dioscorea elephantipes GN=ycf3 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.338e-36
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYF+A+ERNPFLPQAFNNMAVICH
Sbjct:   45 MSAQSEGNYAEALQNYYEATRSEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAIERNPFLPQAFNNMAVICH 119
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_AMBTC (Photosystem I assembly protein ycf3 OS=Amborella trichopoda GN=ycf3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.981e-36
Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA NNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQASNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PHYPA (Photosystem I assembly protein ycf3 OS=Physcomitrella patens GN=ycf3 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.085e-36
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERNP LPQAFNNMAVICH
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERNPSLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_MARPO (Photosystem I assembly protein ycf3 OS=Marchantia polymorpha GN=ycf3 PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 5.085e-36
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERNP LPQAFNNMAVICH
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERNPSLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PSINU (Photosystem I assembly protein ycf3 OS=Psilotum nudum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.480e-35
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYY+AMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERNP LPQAFNNMAVICH
Sbjct:   43 MSAQSEGEYAEALQNYYKAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERNPSLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_CUSOB (Photosystem I assembly protein ycf3 OS=Cuscuta obtusiflora GN=ycf3 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.480e-35
Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYY+AM LE+DPYDRSYILYNIG+IHTSNGEH+KALEYY RA+ERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYQAMHLEMDPYDRSYILYNIGIIHTSNGEHSKALEYYCRAIERNPFLPQAFNNMAVICH 117
The following BLAST results are available for this feature:
BLAST of CF834700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_ACOAM3.522e-3797.33Photosystem I assembly protein ycf3 OS=Acorus amer... [more]
YCF3_BUXMI4.599e-3797.33Photosystem I assembly protein ycf3 OS=Buxus micro... [more]
YCF3_NYMAL6.007e-3797.33Photosystem I assembly protein ycf3 OS=Nymphaea al... [more]
YCF3_NUPAD6.007e-3797.33Photosystem I assembly protein ycf3 OS=Nuphar adve... [more]
YCF3_DIOEL1.338e-3694.67Photosystem I assembly protein ycf3 OS=Dioscorea e... [more]
YCF3_AMBTC2.981e-3696.00Photosystem I assembly protein ycf3 OS=Amborella t... [more]
YCF3_PHYPA5.085e-3694.67Photosystem I assembly protein ycf3 OS=Physcomitre... [more]
YCF3_MARPO5.085e-3694.67Photosystem I assembly protein ycf3 OS=Marchantia ... [more]
YCF3_PSINU1.480e-3593.33Photosystem I assembly protein ycf3 OS=Psilotum nu... [more]
YCF3_CUSOB1.480e-3590.67Photosystem I assembly protein ycf3 OS=Cuscuta obt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834700 ID=CF834700; Name=CF834700; organism=Citrus sinensis; type=EST; length=461bp
TTTTTTTTTTTTTTACTTTTTTCTTTCTATAGTAGAGATAGTCCCCCTTA
ATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAGAACGGATTTC
GTTCTAGTGCCCGAAAATAATATTCTAAAGCTTTTGTATGTTCTCCGTTA
CTTGTGTGGATAAGGCCTATGTTATAGAGTATATAGCTTCGATCGTAAGG
ATCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCAT
AATTGCCTTCAGATTGAGCTGACATCCGTTACGGTCGTCATTCGATTCAA
AGAATTCTCCGTTTCAAAACCGTACATGAGATGAAAATCTCATACGGCTC
CTCCTTTATGTGCATTATGAGAATAATCCATGAAATCAAAAAAGATTGAA
ATATTCTCATTATGAACTAAGTGGGGCTAATGTTTTTACAAGAAATCTCT
AGCCAACCTTC
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