CF834701

Overview
NameCF834701
Unique NameCF834701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6352 contig Csv1_Contig6352:1477..1934. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSA (Photosystem I assembly protein ycf3 OS=Oryza sativa GN=ycf3 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.564e-39
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            M AQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MLAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_NANDO (Photosystem I assembly protein ycf3 OS=Nandina domestica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.564e-39
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_MAIZE (Photosystem I assembly protein ycf3 OS=Zea mays GN=ycf3 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 8.564e-39
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            M AQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MLAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CUSEX (Photosystem I assembly protein ycf3 OS=Cuscuta exaltata GN=ycf3 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.564e-39
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHMKALEYYFRALERNPFLPQAFNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_IPOPU (Photosystem I assembly protein ycf3 OS=Ipomoea purpurea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.461e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA NNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQACNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CALFG (Photosystem I assembly protein ycf3 OS=Calycanthus floridus var. glaucus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.461e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRA+ERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRAIERNPFLPQAFNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_PELHO (Photosystem I assembly protein ycf3 OS=Pelargonium hortorum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.908e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYYEAMRLE+DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA NNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEMDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQALNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CHLSC (Photosystem I assembly protein ycf3 OS=Chloranthus spicatus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.908e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQS+GNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSDGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_SORBI (Photosystem I assembly protein ycf3 OS=Sorghum bicolor GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.250e-38
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   45 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 120          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_SACOF (Photosystem I assembly protein ycf3 OS=Saccharum officinarum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.250e-38
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118          
The following BLAST results are available for this feature:
BLAST of CF834701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_ORYSA8.564e-3998.68Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]
YCF3_NANDO8.564e-3998.68Photosystem I assembly protein ycf3 OS=Nandina dom... [more]
YCF3_MAIZE8.564e-3998.68Photosystem I assembly protein ycf3 OS=Zea mays GN... [more]
YCF3_CUSEX8.564e-3998.68Photosystem I assembly protein ycf3 OS=Cuscuta exa... [more]
YCF3_IPOPU1.461e-3898.68Photosystem I assembly protein ycf3 OS=Ipomoea pur... [more]
YCF3_CALFG1.461e-3897.37Photosystem I assembly protein ycf3 OS=Calycanthus... [more]
YCF3_PELHO1.908e-3897.37Photosystem I assembly protein ycf3 OS=Pelargonium... [more]
YCF3_CHLSC1.908e-3897.37Photosystem I assembly protein ycf3 OS=Chloranthus... [more]
YCF3_SORBI4.250e-3897.37Photosystem I assembly protein ycf3 OS=Sorghum bic... [more]
YCF3_SACOF4.250e-3897.37Photosystem I assembly protein ycf3 OS=Saccharum o... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834701 ID=CF834701; Name=CF834701; organism=Citrus sinensis; type=EST; length=464bp
GGAAGGTTGGCCATTTATTTCTTGTAAAAACATTAGCCCCACTTAGTTCA
TACTGAGAATATTTCAATCTTTTTTGATTTCATGGATTATTCTCATAATG
CACATAAAGGAGGAGCCGTATGAGATTTTCATCTCATGTACGGTTTTGAA
ACGGAGAATTCTTTGAATCGAATGACGACCGTAACGGATGTCAGCTCAAT
CTGAAGGCAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGA
CTAGAAATTGATCCTTACGATCGAAGCTATATACTCTATAACATAGGCCT
TATCCACACAAGTAACGGAGAACATACAAAAGCTTTAGAATATTATTTTC
GGGCACTAGAACGAAATCCGTTCTTACCACAAGCTTTTAATAATATGGCT
GTGATCTGTCATTACGTGCGACTATCTCTACTATAGAAAGAAAAAAGTAA
AAAAAAAAAAAAAA
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