CF834701

Overview
NameCF834701
Unique NameCF834701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6352 contig Csv1_Contig6352:1477..1934. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_ACOAM (Photosystem I assembly protein ycf3 OS=Acorus americanus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.551e-38
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_BUXMI (Photosystem I assembly protein ycf3 OS=Buxus microphylla GN=ycf3 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 7.250e-38
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY RALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYSRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_NYMAL (Photosystem I assembly protein ycf3 OS=Nymphaea alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 9.469e-38
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYYEAMR EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA NNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQASNNMAVICHY 118
[Close]
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_NUPAD (Photosystem I assembly protein ycf3 OS=Nuphar advena GN=ycf3 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 9.469e-38
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYYEAMR EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA NNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQASNNMAVICHY 118
[Close]
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_DIOEL (Photosystem I assembly protein ycf3 OS=Dioscorea elephantipes GN=ycf3 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.109e-37
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYF+A+ERNPFLPQAFNNMAVICHY
Sbjct:   45 MSAQSEGNYAEALQNYYEATRSEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAIERNPFLPQAFNNMAVICHY 120
[Close]
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_AMBTC (Photosystem I assembly protein ycf3 OS=Amborella trichopoda GN=ycf3 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.699e-37
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 2 
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA NNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQASNNMAVICHY 118
[Close]
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_PHYPA (Photosystem I assembly protein ycf3 OS=Physcomitrella patens GN=ycf3 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 8.016e-37
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 2 
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERNP LPQAFNNMAVICHY
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERNPSLPQAFNNMAVICHY 118
[Close]
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_MARPO (Photosystem I assembly protein ycf3 OS=Marchantia polymorpha GN=ycf3 PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 8.016e-37
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 2 
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERNP LPQAFNNMAVICHY
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERNPSLPQAFNNMAVICHY 118
[Close]
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_PSINU (Photosystem I assembly protein ycf3 OS=Psilotum nudum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.332e-36
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 2 
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEALQNYY+AMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERNP LPQAFNNMAVICHY
Sbjct:   43 MSAQSEGEYAEALQNYYKAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERNPSLPQAFNNMAVICHY 118
[Close]
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CUSOB (Photosystem I assembly protein ycf3 OS=Cuscuta obtusiflora GN=ycf3 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.332e-36
Identity = 69/76 (90.79%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYY+AM LE+DPYDRSYILYNIG+IHTSNGEH+KALEYY RA+ERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYQAMHLEMDPYDRSYILYNIGIIHTSNGEHSKALEYYCRAIERNPFLPQAFNNMAVICHY 118
The following BLAST results are available for this feature:
BLAST of CF834701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_ACOAM5.551e-3897.37Photosystem I assembly protein ycf3 OS=Acorus amer... [more]
YCF3_BUXMI7.250e-3897.37Photosystem I assembly protein ycf3 OS=Buxus micro... [more]
YCF3_NYMAL9.469e-3897.37Photosystem I assembly protein ycf3 OS=Nymphaea al... [more]
YCF3_NUPAD9.469e-3897.37Photosystem I assembly protein ycf3 OS=Nuphar adve... [more]
YCF3_DIOEL2.109e-3794.74Photosystem I assembly protein ycf3 OS=Dioscorea e... [more]
YCF3_AMBTC4.699e-3796.05Photosystem I assembly protein ycf3 OS=Amborella t... [more]
YCF3_PHYPA8.016e-3794.74Photosystem I assembly protein ycf3 OS=Physcomitre... [more]
YCF3_MARPO8.016e-3794.74Photosystem I assembly protein ycf3 OS=Marchantia ... [more]
YCF3_PSINU2.332e-3693.42Photosystem I assembly protein ycf3 OS=Psilotum nu... [more]
YCF3_CUSOB2.332e-3690.79Photosystem I assembly protein ycf3 OS=Cuscuta obt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834701 ID=CF834701; Name=CF834701; organism=Citrus sinensis; type=EST; length=464bp
GGAAGGTTGGCCATTTATTTCTTGTAAAAACATTAGCCCCACTTAGTTCA
TACTGAGAATATTTCAATCTTTTTTGATTTCATGGATTATTCTCATAATG
CACATAAAGGAGGAGCCGTATGAGATTTTCATCTCATGTACGGTTTTGAA
ACGGAGAATTCTTTGAATCGAATGACGACCGTAACGGATGTCAGCTCAAT
CTGAAGGCAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGA
CTAGAAATTGATCCTTACGATCGAAGCTATATACTCTATAACATAGGCCT
TATCCACACAAGTAACGGAGAACATACAAAAGCTTTAGAATATTATTTTC
GGGCACTAGAACGAAATCCGTTCTTACCACAAGCTTTTAATAATATGGCT
GTGATCTGTCATTACGTGCGACTATCTCTACTATAGAAAGAAAAAAGTAA
AAAAAAAAAAAAAA
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