CF834701

Overview
NameCF834701
Unique NameCF834701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6352 contig Csv1_Contig6352:1477..1934. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CUSGR (Photosystem I assembly protein ycf3 OS=Cuscuta gronovii GN=ycf3 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.332e-36
Identity = 69/76 (90.79%), Postives = 74/76 (97.37%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEGNYAEALQNYY+AM LE+DPYDRSYILYNIG+IHTSNGEH+KALEYY RA+ERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYQAMHLEMDPYDRSYILYNIGIIHTSNGEHSKALEYYCRAIERNPFLPQAFNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CHAGL (Photosystem I assembly protein ycf3 OS=Chaetosphaeridium globosum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.332e-36
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG+HTKALEYY +ALERNP LPQAFNNMAVICHY
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGQHTKALEYYLQALERNPALPQAFNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CHAVU (Photosystem I assembly protein ycf3 OS=Chara vulgaris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.196e-36
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQ+EG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERNP LPQAFNN+AVICHY
Sbjct:   43 MSAQAEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERNPSLPQAFNNVAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_ZYGCR (Photosystem I assembly protein ycf3 OS=Zygnema circumcarinatum GN=ycf3 PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 6.786e-36
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KA+EYY +ALERNP LPQAFNNMAVICHY
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKAIEYYLQALERNPSLPQAFNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_ANGEV (Photosystem I assembly protein ycf3 OS=Angiopteris evecta GN=ycf3 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.974e-35
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEALQNYY+AMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYY +ALERNP LPQAFNNMAVICHY
Sbjct:   43 MSAQSEGEYAEALQNYYKAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYSQALERNPSLPQAFNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_STAPU (Photosystem I assembly protein ycf3 OS=Staurastrum punctulatum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.579e-35
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEAL NYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERNP LPQA NNMAVICHY
Sbjct:   43 MSAQSEGEYAEALLNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHVKALEYYFQALERNPSLPQALNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_HUPLU (Photosystem I assembly protein ycf3 OS=Huperzia lucidula GN=ycf3 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.368e-35
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEA QNYYEAMRLEIDPYDRSYIL+NIGLIHTSNGEH +ALEYYF+ALERNP LPQAFNNMAVICHY
Sbjct:   43 MSAQSEGEYAEASQNYYEAMRLEIDPYDRSYILHNIGLIHTSNGEHARALEYYFQALERNPSLPQAFNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_GNEPA (Photosystem I assembly protein ycf3 OS=Gnetum parvifolium GN=ycf3 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.368e-35
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGL+HTSNGEH KALEYYF+ALERNP LPQA NN A+ICHY
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERNPILPQALNNTALICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_ANTFO (Photosystem I assembly protein ycf3 OS=Anthoceros formosae GN=ycf3 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.368e-35
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERN  LPQA NNMAVICHY
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERNSSLPQALNNMAVICHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_PINTH (Photosystem I assembly protein ycf3 OS=Pinus thunbergii GN=ycf3 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.744e-35
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEALQNYYEAMRLE DPYDRSYILYNIGL+HTSNGEHTKALEYYF+ALERNP LPQA NN A+ICHY
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNTALICHY 118          
The following BLAST results are available for this feature:
BLAST of CF834701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_CUSGR2.332e-3690.79Photosystem I assembly protein ycf3 OS=Cuscuta gro... [more]
YCF3_CHAGL2.332e-3693.42Photosystem I assembly protein ycf3 OS=Chaetosphae... [more]
YCF3_CHAVU5.196e-3692.11Photosystem I assembly protein ycf3 OS=Chara vulga... [more]
YCF3_ZYGCR6.786e-3692.11Photosystem I assembly protein ycf3 OS=Zygnema cir... [more]
YCF3_ANGEV1.974e-3592.11Photosystem I assembly protein ycf3 OS=Angiopteris... [more]
YCF3_STAPU2.579e-3592.11Photosystem I assembly protein ycf3 OS=Staurastrum... [more]
YCF3_HUPLU3.368e-3590.79Photosystem I assembly protein ycf3 OS=Huperzia lu... [more]
YCF3_GNEPA3.368e-3589.47Photosystem I assembly protein ycf3 OS=Gnetum parv... [more]
YCF3_ANTFO3.368e-3592.11Photosystem I assembly protein ycf3 OS=Anthoceros ... [more]
YCF3_PINTH5.744e-3589.47Photosystem I assembly protein ycf3 OS=Pinus thunb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834701 ID=CF834701; Name=CF834701; organism=Citrus sinensis; type=EST; length=464bp
GGAAGGTTGGCCATTTATTTCTTGTAAAAACATTAGCCCCACTTAGTTCA
TACTGAGAATATTTCAATCTTTTTTGATTTCATGGATTATTCTCATAATG
CACATAAAGGAGGAGCCGTATGAGATTTTCATCTCATGTACGGTTTTGAA
ACGGAGAATTCTTTGAATCGAATGACGACCGTAACGGATGTCAGCTCAAT
CTGAAGGCAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGA
CTAGAAATTGATCCTTACGATCGAAGCTATATACTCTATAACATAGGCCT
TATCCACACAAGTAACGGAGAACATACAAAAGCTTTAGAATATTATTTTC
GGGCACTAGAACGAAATCCGTTCTTACCACAAGCTTTTAATAATATGGCT
GTGATCTGTCATTACGTGCGACTATCTCTACTATAGAAAGAAAAAAGTAA
AAAAAAAAAAAAAA
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