CF834701

Overview
NameCF834701
Unique NameCF834701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6352 contig Csv1_Contig6352:1477..1934. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_PSEAK (Photosystem I assembly protein ycf3 OS=Pseudendoclonium akinetum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.853e-31
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQ+EG YAEALQNYY+A++LEIDPYDRSYILYNIGLIHTSNG+H +ALEYY++AL+RNP LPQA NN+AVI HY
Sbjct:   43 MSAQAEGEYAEALQNYYQALKLEIDPYDRSYILYNIGLIHTSNGKHGRALEYYYQALKRNPSLPQALNNIAVIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CHLVU (Photosystem I assembly protein ycf3 OS=Chlorella vulgaris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.853e-31
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEALQNYYEA+RLE D YDRSYILYNIGLIHTSNG+H +AL+YY++ALERNP LPQA NN+AVI HY
Sbjct:   43 MSAQSEGEYAEALQNYYEALRLETDAYDRSYILYNIGLIHTSNGDHARALDYYYQALERNPSLPQALNNIAVIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_OLTVI (Photosystem I assembly protein ycf3 OS=Oltmannsiellopsis viridis GN=ycf3-A PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.584e-31
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            M+AQ+EG YAEALQNYY+A+RLEIDPYDRSYILYNIGLI+T NGEH +ALEYY++ALERNP LPQA NN+AVI HY
Sbjct:   43 MAAQAEGEYAEALQNYYQALRLEIDPYDRSYILYNIGLIYTCNGEHGRALEYYYQALERNPSLPQALNNIAVIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CHLRE (Photosystem I assembly protein ycf3 OS=Chlamydomonas reinhardtii GN=ycf3 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.464e-30
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQ+EG YAEALQNYYEAMRLE+D YDRSYILYNIGLIHTSNGEH +ALEYY++ALERNP L  A NN+AVI HY
Sbjct:   43 MSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNIAVIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_GRATL (Photosystem I assembly protein ycf3 OS=Gracilaria tenuistipitata var. liui GN=ycf3 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEAL+NYYEA+RLE DPYDRSYI+YNIGLI+ SNGEH KALEYY ++LE NP LPQAFNN+A+I HY
Sbjct:   43 MSAQSEGEYAEALENYYEALRLEEDPYDRSYIIYNIGLIYASNGEHIKALEYYHQSLELNPRLPQAFNNIAIIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_BIGNA (Photosystem I assembly protein ycf3 OS=Bigelowiella natans GN=ycf3 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.208e-28
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEALQNYY+A+R EID YDRSY+LYNIGLIH+SNG+ +KALEYY++AL+RNP L QA NN+A I HY
Sbjct:   43 MSAQSEGEYAEALQNYYQALRYEIDAYDRSYMLYNIGLIHSSNGQQSKALEYYYQALDRNPRLSQALNNIATIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_TRIEI (Photosystem I assembly protein ycf3 OS=Trichodesmium erythraeum (strain IMS101) GN=ycf3 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.160e-27
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQ++G YAEAL+NYYEA+ LE DP DRSYILYNIGLIH SNGEH +ALEYY +ALE NP +PQA NN+AVI HY
Sbjct:   43 MSAQADGEYAEALENYYEALNLEDDPNDRSYILYNIGLIHASNGEHDQALEYYHQALENNPRMPQALNNIAVIFHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_GUITH (Photosystem I assembly protein ycf3 OS=Guillardia theta GN=ycf3 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.376e-27
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEAL+NYYEA+RLE DPYDRSYILYNIGLI+ SNGE+ KALEYY +AL+ N  LP A NN+AVI HY
Sbjct:   43 MSAQSEGEYAEALENYYEALRLEEDPYDRSYILYNIGLIYASNGEYVKALEYYHQALDLNSQLPAALNNIAVIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_RHDSA (Photosystem I assembly protein ycf3 OS=Rhodomonas salina GN=ycf3 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.409e-27
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEAL+NYYEA+RLE DPYDRSYILYNIGLI+ SNGE+ KALEYY +AL+ N  LP A NN+AVI HY
Sbjct:   43 MSAQSEGEYAEALENYYEALRLEEDPYDRSYILYNIGLIYASNGEYIKALEYYHQALDLNSRLPPALNNIAVIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_PORYE (Photosystem I assembly protein ycf3 OS=Porphyra yezoensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.409e-27
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEAL+NYYEA++LE DPYDRSYILYNIGLI+ SNGE+ KALEYY + LE N  LPQA NN+AVI HY
Sbjct:   43 MSAQSEGEYAEALENYYEALKLEEDPYDRSYILYNIGLIYASNGEYVKALEYYHQGLELNFKLPQALNNIAVIYHY 118          
The following BLAST results are available for this feature:
BLAST of CF834701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_PSEAK3.853e-3180.26Photosystem I assembly protein ycf3 OS=Pseudendocl... [more]
YCF3_CHLVU3.853e-3181.58Photosystem I assembly protein ycf3 OS=Chlorella v... [more]
YCF3_OLTVI8.584e-3180.26Photosystem I assembly protein ycf3 OS=Oltmannsiel... [more]
YCF3_CHLRE1.464e-3081.58Photosystem I assembly protein ycf3 OS=Chlamydomon... [more]
YCF3_GRATL9.491e-3078.95Photosystem I assembly protein ycf3 OS=Gracilaria ... [more]
YCF3_BIGNA5.208e-2875.00Photosystem I assembly protein ycf3 OS=Bigelowiell... [more]
YCF3_TRIEI1.160e-2775.00Photosystem I assembly protein ycf3 OS=Trichodesmi... [more]
YCF3_GUITH3.376e-2776.32Photosystem I assembly protein ycf3 OS=Guillardia ... [more]
YCF3_RHDSA4.409e-2776.32Photosystem I assembly protein ycf3 OS=Rhodomonas ... [more]
YCF3_PORYE4.409e-2776.32Photosystem I assembly protein ycf3 OS=Porphyra ye... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834701 ID=CF834701; Name=CF834701; organism=Citrus sinensis; type=EST; length=464bp
GGAAGGTTGGCCATTTATTTCTTGTAAAAACATTAGCCCCACTTAGTTCA
TACTGAGAATATTTCAATCTTTTTTGATTTCATGGATTATTCTCATAATG
CACATAAAGGAGGAGCCGTATGAGATTTTCATCTCATGTACGGTTTTGAA
ACGGAGAATTCTTTGAATCGAATGACGACCGTAACGGATGTCAGCTCAAT
CTGAAGGCAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGA
CTAGAAATTGATCCTTACGATCGAAGCTATATACTCTATAACATAGGCCT
TATCCACACAAGTAACGGAGAACATACAAAAGCTTTAGAATATTATTTTC
GGGCACTAGAACGAAATCCGTTCTTACCACAAGCTTTTAATAATATGGCT
GTGATCTGTCATTACGTGCGACTATCTCTACTATAGAAAGAAAAAAGTAA
AAAAAAAAAAAAAA
back to top