CF834718

Overview
NameCF834718
Unique NameCF834718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ERWCT (50S ribosomal protein L2 OS=Erwinia carotovora subsp. atroseptica GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 58/148 (39.19%), Postives = 80/148 (54.05%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + L  +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  101 RRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            + + L  RG   G  +  G +  + +GN LP+ +IP G  + N+E  +G  G LARA+G  A +IS   +  +  VKLPSG  ++I   C A +GQV   G   K L +AG+   ++  KR   P VRGVAMNPV+HPHGGG
Sbjct:   99 KRYILHPRGARIGDTIVSGTEVPIKMGNALPLTNIPLGTAIHNIEITLGKGGQLARAAGAVAKLIS--KEGKSAAVKLPSGEVRLISQNCSATVGQVGNVGVNRKSLGRAGS--KRWLGKR---PVVRGVAMNPVDHPHGGG 233          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20
Identity = 62/163 (38.04%), Postives = 87/163 (53.37%), Query Frame = -3
Query:  245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 730
            + + L   G+  GQ V  G    ++VGN LP+ +IPEG  V NVE   G  G++AR++G  A I+  + D     ++L SG  + I + CRA IG V  G  +   L KAG + H         P VRG  MNP++HPHGGG + Q IG  + +    P G+K
Sbjct:  102 KRYILAPEGIKVGQKVVSGNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRH-----LGVRPTVRGSVMNPIDHPHGGGVSKQPIGRKAPL---TPWGKK 256          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730
            + + L  RG   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:   99 KRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_SODGM (50S ribosomal protein L2 OS=Sodalis glossinidius (strain morsitans) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 58/148 (39.19%), Postives = 81/148 (54.73%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + L  +G+  G+ +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + I S CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  101 RRYILAPKGLKAGEQIQSGVDAAIKAGNALPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIQSECRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730
            + + L  RG   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:   99 KRYILHPRGAIIGDTIISGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730
            + + L  RG   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:   99 KRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_BUXMI (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730
            + + L  RG   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:   97 KRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 231          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_AETGR (50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730
            + + L  RG   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:   99 KRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATIKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_AETCO (50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730
            + + L  RG   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:   99 KRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATIKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_ERWCT1.259e-2039.1950S ribosomal protein L2 OS=Erwinia carotovora sub... [more]
RK2_PELHO1.259e-2041.5550S ribosomal protein L2, chloroplastic OS=Pelargo... [more]
RL2_MYCAP2.804e-2038.0450S ribosomal protein L2 OS=Mycoplasma agalactiae ... [more]
RK2_CUCSA2.804e-2037.6750S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RL2_SODGM3.662e-2039.1950S ribosomal protein L2 OS=Sodalis glossinidius (... [more]
RK2_POPTR3.662e-2037.6750S ribosomal protein L2, chloroplastic OS=Populus... [more]
RK2_CITSI3.662e-2037.6750S ribosomal protein L2, chloroplastic OS=Citrus ... [more]
RK2_BUXMI3.662e-2037.6750S ribosomal protein L2, chloroplastic OS=Buxus m... [more]
RK2_AETGR3.662e-2037.6750S ribosomal protein L2, chloroplastic OS=Aethion... [more]
RK2_AETCO3.662e-2037.6750S ribosomal protein L2, chloroplastic OS=Aethion... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bp
CCCCTTTTTTAGAGCAATTAGCTAAACTTTAAGCCAACATAATTTAACAT
CAGGATCCTTCCAAAGATCCAAATCTGAACAAATTTTTCTAAGGTAATGA
TGCAGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTTG
TAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCT
TGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTG
GCCAGGAGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGT
GGTTACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGC
ACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACC
AGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAA
TCATCGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGC
TTGACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATA
ATCACCAGAAGCTCTAGCCAAAACACCGCGATCACCAACATGATGCTCAA
CGTTGCAAACAACAGCTCCTTCAGGGATAGATCTAACGGGCAGCACATTA
CCAACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGACCCGTGTA
CATACCCCTCAGCGGCAATGAAAAGCTCCTTT
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