CF834718

Overview
NameCF834718
Unique NameCF834718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_SHEDO (50S ribosomal protein L2 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 55/148 (37.16%), Postives = 79/148 (53.38%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + L  +GM +G  +  G  + +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +I+   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  101 RRYILAAKGMKSGDPIQSGVGSEIKTGNSMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_RICRS (50S ribosomal protein L2 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 727
            S+ L  + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+HPHGGG  +  G
Sbjct:  102 SYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK--DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHPHGGGEGKTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_RICRO (50S ribosomal protein L2 OS=Rickettsia rickettsii (strain Iowa) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 727
            S+ L  + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+HPHGGG  +  G
Sbjct:  102 SYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK--DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHPHGGGEGKTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_RICPU (50S ribosomal protein L2 OS=Rickettsia peacockii (strain Rustic) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 727
            S+ L  + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+HPHGGG  +  G
Sbjct:  102 SYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK--DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHPHGGGEGKTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 727
            S+ L  + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+HPHGGG  +  G
Sbjct:  102 SYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK--DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHPHGGGEGKTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 727
            S+ L  + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+HPHGGG  +  G
Sbjct:  102 SYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK--DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHPHGGGEGKTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_RHOBA (50S ribosomal protein L2 OS=Rhodopirellula baltica GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = -3
Query:  305 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 706
            G+  G  +  G  A  +VGN LP+++IP G  VC +E   G   V+ R++G  A + +   + D  ++ LPSG  + +PS CRA IGQV         L KAG +  ++  +R   P VRG AMNP++HPHGGG
Sbjct:  110 GVAAGDKLQNGPDAPPVVGNCLPLKNIPLGTSVCCIEMRAGRGAVMCRSAGTQATLQAR--EADWAQLLLPSGEVRRVPSACRATIGQVGNSDHMNIVLGKAGRS--RWLGRR---PHVRGTAMNPIDHPHGGG 236          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_POLSJ (50S ribosomal protein L2 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGGG 730
            R++ +  RG+  G  +  G +A + VGN LP+R+IP G+ +  +E  +G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG       VKR     P VRGV MNPV+HPHGGG
Sbjct:  101 RTYIIAPRGLEVGATLISGSEAPIRVGNTLPIRNIPVGSTIHCIEMQIGKGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRKIHIECRATIGEVANEEHSLRRLGKAG-------VKRWMGIRPTVRGVVMNPVDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = -3
Query:  287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 727
            ++ L  + +  G  V  G +  +  GN +P+ +IP G +V NVE   G  G +AR++G Y  ++    D     ++L SG ++++P+ C A IG V+    +   + KAG         RN W    P VRGV MNPV+HPHGGG  +  G
Sbjct:  102 AYILAPQRLQPGDVVISGSRVDVKPGNAMPLANIPVGTIVHNVEMKPGKGGQIARSAGTYVQLVGR--DQGYALLRLSSGEQRMVPATCMASIGAVSNPDHSNITIAKAG---------RNRWLGKRPHVRGVVMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_GEOSM (50S ribosomal protein L2 OS=Geobacter sp. (strain M21) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 54/140 (38.57%), Postives = 77/140 (55.00%), Query Frame = -3
Query:  287 GQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 694
            G  V   ++A +  GN LP+R IP G ++ N+E  +G    LAR++G +A +++   +    +VKLPSG  ++I   C+A IGQV         + KAG         R+ W    P VRGVAMNPV+HPHGGG  +  G
Sbjct:  113 GDTVISSEQADIKPGNALPIRCIPLGTIIHNIELKIGKGAQLARSAGTFAQLMA--KEGKYGQVKLPSGEVRMILMDCKATIGQVGNVDHENVSIGKAG---------RSRWLGVRPHVRGVAMNPVDHPHGGGEGRTSG 241          
The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SHEDO5.847e-1837.1650S ribosomal protein L2 OS=Shewanella denitrifica... [more]
RL2_RICRS5.847e-1836.4250S ribosomal protein L2 OS=Rickettsia rickettsii ... [more]
RL2_RICRO5.847e-1836.4250S ribosomal protein L2 OS=Rickettsia rickettsii ... [more]
RL2_RICPU5.847e-1836.4250S ribosomal protein L2 OS=Rickettsia peacockii (... [more]
RL2_RICCN5.847e-1836.4250S ribosomal protein L2 OS=Rickettsia conorii GN=... [more]
RL2_RICAE5.847e-1836.4250S ribosomal protein L2 OS=Rickettsia africae (st... [more]
RL2_RHOBA5.847e-1839.5550S ribosomal protein L2 OS=Rhodopirellula baltica... [more]
RL2_POLSJ5.847e-1837.5050S ribosomal protein L2 OS=Polaromonas sp. (strai... [more]
RL2_PARL15.847e-1834.4450S ribosomal protein L2 OS=Parvibaculum lavamenti... [more]
RL2_GEOSM5.847e-1838.5750S ribosomal protein L2 OS=Geobacter sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bp
CCCCTTTTTTAGAGCAATTAGCTAAACTTTAAGCCAACATAATTTAACAT
CAGGATCCTTCCAAAGATCCAAATCTGAACAAATTTTTCTAAGGTAATGA
TGCAGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTTG
TAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCT
TGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTG
GCCAGGAGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGT
GGTTACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGC
ACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACC
AGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAA
TCATCGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGC
TTGACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATA
ATCACCAGAAGCTCTAGCCAAAACACCGCGATCACCAACATGATGCTCAA
CGTTGCAAACAACAGCTCCTTCAGGGATAGATCTAACGGGCAGCACATTA
CCAACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGACCCGTGTA
CATACCCCTCAGCGGCAATGAAAAGCTCCTTT
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