CF834718

Overview
NameCF834718
Unique NameCF834718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_DINSH (50S ribosomal protein L2 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = -3
Query:  287 GQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 694
            G  V   +KA +  GN +P   +P G +V N+E   G  G +ARA+G YA  +    D    +++L SG  +++   C A +G V+    + + L KAG   HK        P VRGV MNPV+HPHGGG  +  G
Sbjct:  113 GDKVVASQKADIKPGNAMPFSGMPIGTIVHNIELKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNLGKAGRNRHK-----GIRPSVRGVVMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CHLAD (50S ribosomal protein L2 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = -3
Query:  305 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 706
            G+  G  V  G  A + VGN LP+ +IP G  + N+E  +G  GVL RA+G  A +++   + D   +++PSG  ++I   C A IGQV         L KAG +  ++  +R   P+VRG AMNP +HPHGGG
Sbjct:  109 GLKVGDTVMSGPNAEIRVGNALPLGAIPLGTQIHNIELEIGRGGVLVRAAGTAAQLMA--KEGDYATIRMPSGEVRMIHLRCMATIGQVGNVDHQNIRLGKAGRS--RWLGRR---PRVRGAAMNPRDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_SOLUE (50S ribosomal protein L2 OS=Solibacter usitatus (strain Ellin6076) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = -3
Query:  287 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 706
            G+  G  +  G  A +++GN LP+++IP G +V N+E   G  G +AR++G  A ++S   +     +KLPSG  + +   C A +GQV         L KAG      +   N     RGV+MNPV+HPHGGG  +  G
Sbjct:  109 GLKVGMKIMSGPNADILIGNALPLKNIPAGTIVHNIELKPGKGGQMARSAGSQAQLVSR--EGGLALLKLPSGEIRRVAVECMATVGQVGNVDHENVSLGKAGRKRWMGKTPHN-----RGVSMNPVDHPHGGGEGKTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_RHOFD (50S ribosomal protein L2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 52/142 (36.62%), Postives = 79/142 (55.63%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            R + +  RG+  G  +  G +A + VGN LP+R+IP G++V  +E  +G    + R++G  A +++   +    +V++ SG  + I   CRA +GQVA    + + L KAG    K        P VRGV MNPV+HPHGGG
Sbjct:  101 RRYIIAPRGLEVGASIMSGAEAPIRVGNTLPIRNIPVGSIVHCIELQIGKGAQIVRSAGTSATLLAR--EGIYAQVRMRSGEVRKIHIECRATLGQVANEEHSLRRLGKAGAKRWK-----GIRPTVRGVVMNPVDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_RALME (50S ribosomal protein L2 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            R + +  +GM  GQ +  G +A +  GN LP+R+IP G  + NVE   G    +ARA+G  AV+++   +    +V+L SG  + +   CRA IG+V     + + + KAG         R   P VRGV MNPV+HPHGGG
Sbjct:  102 RRYIIATKGMVAGQALMNGSEAPIKAGNNLPIRNIPVGTTINNVEILPGKGAQVARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATIGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHPHGGG 236          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_RALEH (50S ribosomal protein L2 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            R + +  +GM  GQ +  G +A +  GN LP+R+IP G  + NVE   G    +ARA+G  AV+++   +    +V+L SG  + +   CRA IG+V     + + + KAG         R   P VRGV MNPV+HPHGGG
Sbjct:  102 RRYIIATKGMVAGQPLMNGSEAPIKAGNNLPIRNIPVGTTINNVEMLPGKGSQIARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATIGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHPHGGG 236          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_PETMO (50S ribosomal protein L2 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 52/149 (34.90%), Postives = 83/149 (55.70%), Query Frame = -3
Query:  284 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 730
            + + L  +G++ G+ V  G KA + VGN LP+ +IP G +V N+E   G  G +A+++G YA +++   +     +K+PSG  + +   C A IG V     + +   KAG    ++  +R   PKVRG+  NPV+HP GGG  +  GH
Sbjct:  101 KRYILSPKGLHVGETVMSGAKAEIKVGNSLPLENIPLGTLVHNIEFEPGRGGKIAKSAGTYAQLMA--KEGKYALLKMPSGELRRVRLSCMATIGVVGNEEHSNEVYGKAGKT--RWLGRR---PKVRGMVQNPVDHPMGGGEGRSKGH 242          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_NITOC (50S ribosomal protein L2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = -3
Query:  287 RGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 709
            + +  G  +  G++A +  GN LP+R+IP G +V  +E   G    +AR++G    +++   + D   ++L SG  + +P  CRA IG+V   G   + L KAG    ++R KR   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  108 KAVKVGDIITSGREAPIRDGNCLPLRNIPVGTLVHCIELKPGKGAQIARSAGSSCQLVAR--EGDHAMLRLRSGEIRKVPLECRATIGEVGNDGHGLRSLGKAGAM--RWRGKR---PTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_NEIM0 (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            R + +  RG+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:  101 RRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEAAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_NEIG2 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            R + +  RG+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:  101 RRYIIAPRGIQAGVVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_DINSH1.303e-1736.7650S ribosomal protein L2 OS=Dinoroseobacter shibae... [more]
RL2_CHLAD1.303e-1739.5550S ribosomal protein L2 OS=Chloroflexus aggregans... [more]
RL2_SOLUE1.701e-1735.7150S ribosomal protein L2 OS=Solibacter usitatus (s... [more]
RL2_RHOFD1.701e-1736.6250S ribosomal protein L2 OS=Rhodoferax ferrireduce... [more]
RL2_RALME1.701e-1738.0350S ribosomal protein L2 OS=Ralstonia metalliduran... [more]
RL2_RALEH1.701e-1738.0350S ribosomal protein L2 OS=Ralstonia eutropha (st... [more]
RL2_PETMO1.701e-1734.9050S ribosomal protein L2 OS=Petrotoga mobilis (str... [more]
RL2_NITOC1.701e-1737.5950S ribosomal protein L2 OS=Nitrosococcus oceani (... [more]
RL2_NEIM01.701e-1737.7650S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_NEIG21.701e-1737.7650S ribosomal protein L2 OS=Neisseria gonorrhoeae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bp
CCCCTTTTTTAGAGCAATTAGCTAAACTTTAAGCCAACATAATTTAACAT
CAGGATCCTTCCAAAGATCCAAATCTGAACAAATTTTTCTAAGGTAATGA
TGCAGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTTG
TAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCT
TGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTG
GCCAGGAGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGT
GGTTACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGC
ACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACC
AGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAA
TCATCGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGC
TTGACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATA
ATCACCAGAAGCTCTAGCCAAAACACCGCGATCACCAACATGATGCTCAA
CGTTGCAAACAACAGCTCCTTCAGGGATAGATCTAACGGGCAGCACATTA
CCAACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGACCCGTGTA
CATACCCCTCAGCGGCAATGAAAAGCTCCTTT
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