CF834718

Overview
NameCF834718
Unique NameCF834718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_NEIG1 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            R + +  RG+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:  101 RRYIIAPRGIQAGVVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_MYCPE (50S ribosomal protein L2 OS=Mycoplasma penetrans GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 56/139 (40.29%), Postives = 73/139 (52.52%), Query Frame = -3
Query:  257 KKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 673
            K+  + VGN LP+  IPEG  V N+E + G  G + R++G  A I+  +   + T VKL SG  + I +GC A IG V+        + KAG   H     R   P VRG AMNP +HPHGGG  +     S V  DAP
Sbjct:  122 KQIDIKVGNALPISLIPEGTFVHNIELYPGRGGQMIRSAGSSAQILGKDETGEYTIVKLSSGEVRKIANGCMATIGVVSNEDHNLVVIGKAGTNRH-----RGIRPTVRGSAMNPNDHPHGGGEGR-----SPVGHDAP 250          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_METRJ (50S ribosomal protein L2 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = -3
Query:  272 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 730
            +S+ L  + +  G  V  G+   +  GN  PV S+P G +V NVE  +G  G +AR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG         RN W    P  RGVAMNPV+HPHGGG  +  G  + V
Sbjct:  102 QSYILAPQRLQPGDKVVAGESVDIKPGNAGPVGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFASVGAVSNPDHMNISLGKAG---------RNRWLGKRPHNRGVAMNPVDHPHGGGEGRTSGGRNPV 247          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CUPTR (50S ribosomal protein L2 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 53/142 (37.32%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            R + +  +GM  GQ +  G +A +  GN LP+R+IP G  + NVE   G    +ARA+G  AV+++   +    +V+L SG  + +   CRA +G+V     + + + KAG         R   P VRGV MNPV+HPHGGG
Sbjct:  102 RRYIIATKGMVAGQQLLNGSEAPIKAGNNLPIRNIPVGTTINNVEMLPGKGAQIARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATVGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHPHGGG 236          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOB6 (50S ribosomal protein L2 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3
Query:  278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706
            G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:  109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTNEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CHLP8 (50S ribosomal protein L2 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = -3
Query:  248 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 730
            + + L  +G+  G  +  G+K  + VGN +P+++IP G  V N+E   G  G +AR++G YAV+ +    + T  +KLPSG  + +   CRA IG +         L KAG         R+ W    P+ RG+AMNPV+HP GGG  +           +P GQ
Sbjct:  101 KRYILAPKGLKVGDRIESGEKVDIRVGNTMPLKNIPLGTDVHNIEMKAGKGGQMARSAGSYAVLAAREGVHAT--LKLPSGEIRKVRVECRATIGVIGNSEHENISLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGGGEGKSKSGGGRKHPKSPWGQ 254          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ACIBL (50S ribosomal protein L2 OS=Acidobacteria bacterium (strain Ellin345) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 56/144 (38.89%), Postives = 76/144 (52.78%), Query Frame = -3
Query:  287 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 706
            G+  GQ V  G  A ++VGN LP+R+IP G VV N+E   G    +AR++G  A +++   ++D   +KLPSG  + +   C A IGQV         + KAG         R  W    P  RGV MNPV+HPHGGG  +  G
Sbjct:  109 GLKVGQKVVSGPDADILVGNALPLRNIPAGTVVHNIELKPGKGAQMARSAGAQAQLVA--KESDYALLKLPSGETRRVLVDCMATIGQVGNLDYENVAIGKAG---------RTRWMGVRPTNRGVVMNPVDHPHGGGEGKTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ACIAD (50S ribosomal protein L2 OS=Acinetobacter sp. (strain ADP1) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 58/162 (35.80%), Postives = 87/162 (53.70%), Query Frame = -3
Query:  245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 730
            R + +  +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     V+L SG  + I   CRA+IG+V+      + L KAG +       R   P VRG+AMNPV+HPHGGG  ++ G    ++  +P GQK
Sbjct:  101 RRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGTSVQLLGR--DGSYAIVRLRSGEMRKIHVECRAVIGEVSNQENNLRSLGKAGASRW-----RGVRPTVRGMAMNPVDHPHGGGEGRNKG----IQPVSPWGQK 251          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_PSEAK (50S ribosomal protein L2, chloroplastic OS=Pseudendoclonium akinetum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 54/142 (38.03%), Postives = 80/142 (56.34%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            + + L  RG+  G  V    +A +++GN LP+++IP G  V NVE + G  G L+RA+G  A I++   +     ++LPSG  +++   C A IGQV   G  +   ++ G A     + R   PKVRGV MNP +HPHGGG
Sbjct:  101 KGYILHPRGLKVGGTVVTSPEAPILIGNCLPLKAIPLGTEVHNVELYSGMGGQLSRAAGSSAQIVA--KEGRFVTLRLPSGEVRLVSQNCWATIGQV---GNVDANNIRIGKAGRMRWLGRR--PKVRGVVMNPNDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_PIPCE (50S ribosomal protein L2, chloroplastic OS=Piper cenocladum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 53/146 (36.30%), Postives = 76/146 (52.05%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730
            + + L  RG   G  +  G +  + +GN LP+  +P G  + N+E  +   G LARA+G  + +I+    + T R  LPSG  ++I   C A +GQV      +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:   99 KRYILHPRGAIIGDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLEKGGQLARAAGAVSKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVEVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NEIG11.701e-1737.7650S ribosomal protein L2 OS=Neisseria gonorrhoeae ... [more]
RL2_MYCPE1.701e-1740.2950S ribosomal protein L2 OS=Mycoplasma penetrans G... [more]
RL2_METRJ1.701e-1735.6750S ribosomal protein L2 OS=Methylobacterium radio... [more]
RL2_CUPTR1.701e-1737.3250S ribosomal protein L2 OS=Cupriavidus taiwanensi... [more]
RL2_CLOB61.701e-1738.1950S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CHLP81.701e-1733.9450S ribosomal protein L2 OS=Chlorobaculum parvum (... [more]
RL2_ACIBL1.701e-1738.8950S ribosomal protein L2 OS=Acidobacteria bacteriu... [more]
RL2_ACIAD1.701e-1735.8050S ribosomal protein L2 OS=Acinetobacter sp. (str... [more]
RK2_PSEAK1.701e-1738.0350S ribosomal protein L2, chloroplastic OS=Pseuden... [more]
RK2_PIPCE1.701e-1736.3050S ribosomal protein L2, chloroplastic OS=Piper c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bp
CCCCTTTTTTAGAGCAATTAGCTAAACTTTAAGCCAACATAATTTAACAT
CAGGATCCTTCCAAAGATCCAAATCTGAACAAATTTTTCTAAGGTAATGA
TGCAGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTTG
TAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCT
TGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTG
GCCAGGAGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGT
GGTTACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGC
ACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACC
AGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAA
TCATCGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGC
TTGACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATA
ATCACCAGAAGCTCTAGCCAAAACACCGCGATCACCAACATGATGCTCAA
CGTTGCAAACAACAGCTCCTTCAGGGATAGATCTAACGGGCAGCACATTA
CCAACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGACCCGTGTA
CATACCCCTCAGCGGCAATGAAAAGCTCCTTT
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