CF834718
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_NEIG1 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17 Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730 R + + RG+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG N + R P VRGV MNPV+HPHGGG Sbjct: 101 RRYIIAPRGIQAGVVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_MYCPE (50S ribosomal protein L2 OS=Mycoplasma penetrans GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17 Identity = 56/139 (40.29%), Postives = 73/139 (52.52%), Query Frame = -3 Query: 257 KKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 673 K+ + VGN LP+ IPEG V N+E + G G + R++G A I+ + + T VKL SG + I +GC A IG V+ + KAG H R P VRG AMNP +HPHGGG + S V DAP Sbjct: 122 KQIDIKVGNALPISLIPEGTFVHNIELYPGRGGQMIRSAGSSAQILGKDETGEYTIVKLSSGEVRKIANGCMATIGVVSNEDHNLVVIGKAGTNRH-----RGIRPTVRGSAMNPNDHPHGGGEGR-----SPVGHDAP 250
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_METRJ (50S ribosomal protein L2 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17 Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = -3 Query: 272 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 730 +S+ L + + G V G+ + GN PV S+P G +V NVE +G G +AR++G+YA I+ D ++L SG ++++ C A +G V+ L KAG RN W P RGVAMNPV+HPHGGG + G + V Sbjct: 102 QSYILAPQRLQPGDKVVAGESVDIKPGNAGPVGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFASVGAVSNPDHMNISLGKAG---------RNRWLGKRPHNRGVAMNPVDHPHGGGEGRTSGGRNPV 247
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CUPTR (50S ribosomal protein L2 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17 Identity = 53/142 (37.32%), Postives = 78/142 (54.93%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730 R + + +GM GQ + G +A + GN LP+R+IP G + NVE G +ARA+G AV+++ + +V+L SG + + CRA +G+V + + + KAG R P VRGV MNPV+HPHGGG Sbjct: 102 RRYIIATKGMVAGQQLLNGSEAPIKAGNNLPIRNIPVGTTINNVEMLPGKGAQIARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATVGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHPHGGG 236
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOB6 (50S ribosomal protein L2 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17 Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3 Query: 278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706 G+ G V G ++ + VGN LP+R+IP G V+ N+E G L R++G+ A +++ + D ++V+LPSG + I CRA IG V+ + KAG H P VRG MNP +HPHGGG IGH S Sbjct: 109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTNEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CHLP8 (50S ribosomal protein L2 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17 Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = -3 Query: 248 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 730 + + L +G+ G + G+K + VGN +P+++IP G V N+E G G +AR++G YAV+ + + T +KLPSG + + CRA IG + L KAG R+ W P+ RG+AMNPV+HP GGG + +P GQ Sbjct: 101 KRYILAPKGLKVGDRIESGEKVDIRVGNTMPLKNIPLGTDVHNIEMKAGKGGQMARSAGSYAVLAAREGVHAT--LKLPSGEIRKVRVECRATIGVIGNSEHENISLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGGGEGKSKSGGGRKHPKSPWGQ 254
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ACIBL (50S ribosomal protein L2 OS=Acidobacteria bacterium (strain Ellin345) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17 Identity = 56/144 (38.89%), Postives = 76/144 (52.78%), Query Frame = -3 Query: 287 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 706 G+ GQ V G A ++VGN LP+R+IP G VV N+E G +AR++G A +++ ++D +KLPSG + + C A IGQV + KAG R W P RGV MNPV+HPHGGG + G Sbjct: 109 GLKVGQKVVSGPDADILVGNALPLRNIPAGTVVHNIELKPGKGAQMARSAGAQAQLVA--KESDYALLKLPSGETRRVLVDCMATIGQVGNLDYENVAIGKAG---------RTRWMGVRPTNRGVVMNPVDHPHGGGEGKTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ACIAD (50S ribosomal protein L2 OS=Acinetobacter sp. (strain ADP1) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17 Identity = 58/162 (35.80%), Postives = 87/162 (53.70%), Query Frame = -3 Query: 245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 730 R + + +G+ G V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D V+L SG + I CRA+IG+V+ + L KAG + R P VRG+AMNPV+HPHGGG ++ G ++ +P GQK Sbjct: 101 RRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGTSVQLLGR--DGSYAIVRLRSGEMRKIHVECRAVIGEVSNQENNLRSLGKAGASRW-----RGVRPTVRGMAMNPVDHPHGGGEGRNKG----IQPVSPWGQK 251
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_PSEAK (50S ribosomal protein L2, chloroplastic OS=Pseudendoclonium akinetum GN=rpl2 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17 Identity = 54/142 (38.03%), Postives = 80/142 (56.34%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730 + + L RG+ G V +A +++GN LP+++IP G V NVE + G G L+RA+G A I++ + ++LPSG +++ C A IGQV G + ++ G A + R PKVRGV MNP +HPHGGG Sbjct: 101 KGYILHPRGLKVGGTVVTSPEAPILIGNCLPLKAIPLGTEVHNVELYSGMGGQLSRAAGSSAQIVA--KEGRFVTLRLPSGEVRLVSQNCWATIGQV---GNVDANNIRIGKAGRMRWLGRR--PKVRGVVMNPNDHPHGGG 235
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_PIPCE (50S ribosomal protein L2, chloroplastic OS=Piper cenocladum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17 Identity = 53/146 (36.30%), Postives = 76/146 (52.05%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730 + + L RG G + G + + +GN LP+ +P G + N+E + G LARA+G + +I+ + T R LPSG ++I C A +GQV +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 99 KRYILHPRGAIIGDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLEKGGQLARAAGAVSKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVEVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233 The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bpback to top |