CF834718

Overview
NameCF834718
Unique NameCF834718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_VIBCM (50S ribosomal protein L2 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + +  +G+  G  +  G  A +  GN +P+R+IP G+ + NVE   G    LAR++G YA +++   D     ++L SG  + + S  RA IG+V       + L KAG A       R   P VRGV MNPV+HPHGGG  +  G
Sbjct:  101 RRYIIAPKGLQAGDVIQSGPDAPIKAGNAMPMRNIPVGSTIHNVELTPGKGAQLARSAGAYAQLVAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNAEHMLRELGKAGAARW-----RGVRPTVRGVVMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_VIBCH (50S ribosomal protein L2 OS=Vibrio cholerae GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + +  +G+  G  +  G  A +  GN +P+R+IP G+ + NVE   G    LAR++G YA +++   D     ++L SG  + + S  RA IG+V       + L KAG A       R   P VRGV MNPV+HPHGGG  +  G
Sbjct:  101 RRYIIAPKGLQAGDVIQSGPDAPIKAGNAMPMRNIPVGSTIHNVELTPGKGAQLARSAGAYAQLVAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNAEHMLRELGKAGAARW-----RGVRPTVRGVVMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_VIBC3 (50S ribosomal protein L2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + +  +G+  G  +  G  A +  GN +P+R+IP G+ + NVE   G    LAR++G YA +++   D     ++L SG  + + S  RA IG+V       + L KAG A       R   P VRGV MNPV+HPHGGG  +  G
Sbjct:  101 RRYIIAPKGLQAGDVIQSGPDAPIKAGNAMPMRNIPVGSTIHNVELTPGKGAQLARSAGAYAQLVAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNAEHMLRELGKAGAARW-----RGVRPTVRGVVMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_THENN (50S ribosomal protein L2 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = -3
Query:  275 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHAST 730
            + + L  +G+  G  +  G  A +  GN LP+  IP G +V NVE   G  G +ARA+G Y  I++   + D   +++PSG  + +   C A +G V       +   KAG    ++  +R   P VRGVAMNPV+HPHGGG  +  GH  T
Sbjct:  102 KRYILAPKGIKVGDTLMSGSDAEIKPGNALPLEKIPVGTLVHNVEFTPGKGGQIARAAGTYCQIMA--KEGDYALLRMPSGELRKVHIKCYATVGVVGNEDHKNEVHGKAGRV--RWLGRR---PHVRGVAMNPVDHPHGGGEGRGKGHHPT 246          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_SYMTH (50S ribosomal protein L2 OS=Symbiobacterium thermophilum GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = -3
Query:  305 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH-KFRVKRNCWPKVRGVAMNPVEHPHGGG 706
            G+  G  V  G  A + VGN LP+ +IP G +V N+E + G  G L R++G  A I++   +     ++LPSG ++ +   CRA +GQV         + KAG   H  FR      P VRGV MNPV+HPHGGG
Sbjct:  110 GLNVGDTVVSGPDADIKVGNALPLENIPVGTIVHNIELYPGRGGQLVRSAGASAQIMA--KEGRYALLRLPSGEQRKVLLACRATVGQVGNLEHENIVIGKAGRKRHLGFR------PAVRGVVMNPVDHPHGGG 236          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ROSDO (50S ribosomal protein L2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 48/148 (32.43%), Postives = 76/148 (51.35%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            +++ L  + +  G  V   +KA +  GN +P   +P G ++ N+E   G  G +ARA+G YA  +    D    +++L SG  +++   C A +G V+    + +   KAG   HK        P VRGV MNP++HPHGGG  +  G
Sbjct:  101 QAYILAPQRLAVGDTVVASQKADIKPGNAMPFSGMPIGTIIHNIEMKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNYGKAGRMRHK-----GVRPSVRGVVMNPIDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_RALEJ (50S ribosomal protein L2 OS=Ralstonia eutropha (strain JMP134) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            R + +  +GM  GQ +  G +A +  GN LP+R+IP G  + NVE   G    +ARA+G  AV+++   +    +V+L SG  + +   CRA IG+V     + + + KAG         R   P VRGV MNPV+HPHGGG
Sbjct:  102 RRYIIATKGMVAGQALLNGAEAPIKAGNNLPIRNIPVGTTINNVEILPGKGAQVARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATIGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHPHGGG 236          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_PSYCK (50S ribosomal protein L2 OS=Psychrobacter cryohalolentis (strain K5) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 57/162 (35.19%), Postives = 85/162 (52.47%), Query Frame = -3
Query:  245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 730
            R + +  +    G  V  G+ + +  GN LP+++IP G V+ N+E  +G    +ARA+G    ++    D     ++L SG  + +   CRA+IG+V+      K L KAG +       R   P VRGVAMNPV+HPHGGG  ++ G   T    +P GQK
Sbjct:  101 RRYIIAAKKQAVGDTVMSGELSPIRPGNCLPLKNIPLGTVIHNIELKIGKGAQMARAAGASVQLLGR--DGIYAILRLRSGETRRVHVNCRAVIGEVSNTENNLKSLGKAGASRW-----RGIRPSVRGVAMNPVDHPHGGGEGRNKGRHPT----SPWGQK 251          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_PSYA2 (50S ribosomal protein L2 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 57/162 (35.19%), Postives = 85/162 (52.47%), Query Frame = -3
Query:  245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 730
            R + +  +    G  V  G+ + +  GN LP+++IP G V+ N+E  +G    +ARA+G    ++    D     ++L SG  + +   CRA+IG+V+      K L KAG +       R   P VRGVAMNPV+HPHGGG  ++ G   T    +P GQK
Sbjct:  101 RRYIIAAKKQAVGDTVMSGELSPIRPGNCLPLKNIPLGTVIHNIELKIGKGAQMARAAGASVQLLGR--DGIYAILRLRSGETRRVHVNCRAVIGEVSNTENNLKSLGKAGASRW-----RGIRPSVRGVAMNPVDHPHGGGEGRNKGRHPT----SPWGQK 251          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_NITWN (50S ribosomal protein L2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 52/148 (35.14%), Postives = 77/148 (52.03%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            +++ L  + M  G  V  G    +  GNV+P+ ++P G +V NVE  +G  G LAR++G YA I+    D D   ++L SG ++++   CR  IG V+        + KAG      R   N     RGV MNP++HPHGGG  +  G
Sbjct:  101 QAYILAPQRMAVGDTVVAGNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGR--DQDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSVGKAGRTRWMGRRPHN-----RGVVMNPIDHPHGGGEGRTSG 241          
The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_VIBCM2.222e-1736.4950S ribosomal protein L2 OS=Vibrio cholerae seroty... [more]
RL2_VIBCH2.222e-1736.4950S ribosomal protein L2 OS=Vibrio cholerae GN=rpl... [more]
RL2_VIBC32.222e-1736.4950S ribosomal protein L2 OS=Vibrio cholerae seroty... [more]
RL2_THENN2.222e-1736.1850S ribosomal protein L2 OS=Thermotoga neapolitana... [more]
RL2_SYMTH2.222e-1740.0050S ribosomal protein L2 OS=Symbiobacterium thermo... [more]
RL2_ROSDO2.222e-1732.4350S ribosomal protein L2 OS=Roseobacter denitrific... [more]
RL2_RALEJ2.222e-1738.0350S ribosomal protein L2 OS=Ralstonia eutropha (st... [more]
RL2_PSYCK2.222e-1735.1950S ribosomal protein L2 OS=Psychrobacter cryohalo... [more]
RL2_PSYA22.222e-1735.1950S ribosomal protein L2 OS=Psychrobacter arcticus... [more]
RL2_NITWN2.222e-1735.1450S ribosomal protein L2 OS=Nitrobacter winogradsk... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bp
CCCCTTTTTTAGAGCAATTAGCTAAACTTTAAGCCAACATAATTTAACAT
CAGGATCCTTCCAAAGATCCAAATCTGAACAAATTTTTCTAAGGTAATGA
TGCAGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTTG
TAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCT
TGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTG
GCCAGGAGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGT
GGTTACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGC
ACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACC
AGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAA
TCATCGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGC
TTGACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATA
ATCACCAGAAGCTCTAGCCAAAACACCGCGATCACCAACATGATGCTCAA
CGTTGCAAACAACAGCTCCTTCAGGGATAGATCTAACGGGCAGCACATTA
CCAACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGACCCGTGTA
CATACCCCTCAGCGGCAATGAAAAGCTCCTTT
back to top