CF834718
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_VIBCM (50S ribosomal protein L2 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 R + + +G+ G + G A + GN +P+R+IP G+ + NVE G LAR++G YA +++ D ++L SG + + S RA IG+V + L KAG A R P VRGV MNPV+HPHGGG + G Sbjct: 101 RRYIIAPKGLQAGDVIQSGPDAPIKAGNAMPMRNIPVGSTIHNVELTPGKGAQLARSAGAYAQLVAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNAEHMLRELGKAGAARW-----RGVRPTVRGVVMNPVDHPHGGGEGRTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_VIBCH (50S ribosomal protein L2 OS=Vibrio cholerae GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 R + + +G+ G + G A + GN +P+R+IP G+ + NVE G LAR++G YA +++ D ++L SG + + S RA IG+V + L KAG A R P VRGV MNPV+HPHGGG + G Sbjct: 101 RRYIIAPKGLQAGDVIQSGPDAPIKAGNAMPMRNIPVGSTIHNVELTPGKGAQLARSAGAYAQLVAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNAEHMLRELGKAGAARW-----RGVRPTVRGVVMNPVDHPHGGGEGRTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_VIBC3 (50S ribosomal protein L2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 R + + +G+ G + G A + GN +P+R+IP G+ + NVE G LAR++G YA +++ D ++L SG + + S RA IG+V + L KAG A R P VRGV MNPV+HPHGGG + G Sbjct: 101 RRYIIAPKGLQAGDVIQSGPDAPIKAGNAMPMRNIPVGSTIHNVELTPGKGAQLARSAGAYAQLVAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNAEHMLRELGKAGAARW-----RGVRPTVRGVVMNPVDHPHGGGEGRTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_THENN (50S ribosomal protein L2 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = -3 Query: 275 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHAST 730 + + L +G+ G + G A + GN LP+ IP G +V NVE G G +ARA+G Y I++ + D +++PSG + + C A +G V + KAG ++ +R P VRGVAMNPV+HPHGGG + GH T Sbjct: 102 KRYILAPKGIKVGDTLMSGSDAEIKPGNALPLEKIPVGTLVHNVEFTPGKGGQIARAAGTYCQIMA--KEGDYALLRMPSGELRKVHIKCYATVGVVGNEDHKNEVHGKAGRV--RWLGRR---PHVRGVAMNPVDHPHGGGEGRGKGHHPT 246
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_SYMTH (50S ribosomal protein L2 OS=Symbiobacterium thermophilum GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = -3 Query: 305 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH-KFRVKRNCWPKVRGVAMNPVEHPHGGG 706 G+ G V G A + VGN LP+ +IP G +V N+E + G G L R++G A I++ + ++LPSG ++ + CRA +GQV + KAG H FR P VRGV MNPV+HPHGGG Sbjct: 110 GLNVGDTVVSGPDADIKVGNALPLENIPVGTIVHNIELYPGRGGQLVRSAGASAQIMA--KEGRYALLRLPSGEQRKVLLACRATVGQVGNLEHENIVIGKAGRKRHLGFR------PAVRGVVMNPVDHPHGGG 236
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ROSDO (50S ribosomal protein L2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 48/148 (32.43%), Postives = 76/148 (51.35%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 +++ L + + G V +KA + GN +P +P G ++ N+E G G +ARA+G YA + D +++L SG +++ C A +G V+ + + KAG HK P VRGV MNP++HPHGGG + G Sbjct: 101 QAYILAPQRLAVGDTVVASQKADIKPGNAMPFSGMPIGTIIHNIEMKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNYGKAGRMRHK-----GVRPSVRGVVMNPIDHPHGGGEGRTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_RALEJ (50S ribosomal protein L2 OS=Ralstonia eutropha (strain JMP134) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730 R + + +GM GQ + G +A + GN LP+R+IP G + NVE G +ARA+G AV+++ + +V+L SG + + CRA IG+V + + + KAG R P VRGV MNPV+HPHGGG Sbjct: 102 RRYIIATKGMVAGQALLNGAEAPIKAGNNLPIRNIPVGTTINNVEILPGKGAQVARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATIGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHPHGGG 236
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_PSYCK (50S ribosomal protein L2 OS=Psychrobacter cryohalolentis (strain K5) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 57/162 (35.19%), Postives = 85/162 (52.47%), Query Frame = -3 Query: 245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 730 R + + + G V G+ + + GN LP+++IP G V+ N+E +G +ARA+G ++ D ++L SG + + CRA+IG+V+ K L KAG + R P VRGVAMNPV+HPHGGG ++ G T +P GQK Sbjct: 101 RRYIIAAKKQAVGDTVMSGELSPIRPGNCLPLKNIPLGTVIHNIELKIGKGAQMARAAGASVQLLGR--DGIYAILRLRSGETRRVHVNCRAVIGEVSNTENNLKSLGKAGASRW-----RGIRPSVRGVAMNPVDHPHGGGEGRNKGRHPT----SPWGQK 251
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_PSYA2 (50S ribosomal protein L2 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 57/162 (35.19%), Postives = 85/162 (52.47%), Query Frame = -3 Query: 245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 730 R + + + G V G+ + + GN LP+++IP G V+ N+E +G +ARA+G ++ D ++L SG + + CRA+IG+V+ K L KAG + R P VRGVAMNPV+HPHGGG ++ G T +P GQK Sbjct: 101 RRYIIAAKKQAVGDTVMSGELSPIRPGNCLPLKNIPLGTVIHNIELKIGKGAQMARAAGASVQLLGR--DGIYAILRLRSGETRRVHVNCRAVIGEVSNTENNLKSLGKAGASRW-----RGIRPSVRGVAMNPVDHPHGGGEGRNKGRHPT----SPWGQK 251
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_NITWN (50S ribosomal protein L2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 52/148 (35.14%), Postives = 77/148 (52.03%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 +++ L + M G V G + GNV+P+ ++P G +V NVE +G G LAR++G YA I+ D D ++L SG ++++ CR IG V+ + KAG R N RGV MNP++HPHGGG + G Sbjct: 101 QAYILAPQRMAVGDTVVAGNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGR--DQDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSVGKAGRTRWMGRRPHN-----RGVVMNPIDHPHGGGEGRTSG 241 The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bpback to top |