CF834718
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_MYCH7 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 7448) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 60/163 (36.81%), Postives = 82/163 (50.31%), Query Frame = -3 Query: 245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 730 + + L + + GQ + G K+ ++VGN LP+ IPEG V N+E G L R++G +A I + D +KL SG + I + CRA IG V + + KAG HK P VRG MNP +HPHGGG Q IG S + P G+K Sbjct: 102 KRYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK-----GIRPTVRGSVMNPNDHPHGGGEGKQPIGRKSPL---TPWGKK 256
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_MYCH2 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 232) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 60/163 (36.81%), Postives = 82/163 (50.31%), Query Frame = -3 Query: 245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 730 + + L + + GQ + G K+ ++VGN LP+ IPEG V N+E G L R++G +A I + D +KL SG + I + CRA IG V + + KAG HK P VRG MNP +HPHGGG Q IG S + P G+K Sbjct: 102 KRYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK-----GIRPTVRGSVMNPNDHPHGGGEGKQPIGRKSPL---TPWGKK 256
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOBM (50S ribosomal protein L2 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3 Query: 278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706 G+ G V G ++ + VGN LP+R+IP G V+ N+E G L R++G+ A +++ + D ++V+LPSG + I CRA IG V+ + KAG H P VRG MNP +HPHGGG IGH S Sbjct: 109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOBL (50S ribosomal protein L2 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3 Query: 278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706 G+ G V G ++ + VGN LP+R+IP G V+ N+E G L R++G+ A +++ + D ++V+LPSG + I CRA IG V+ + KAG H P VRG MNP +HPHGGG IGH S Sbjct: 109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOBJ (50S ribosomal protein L2 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3 Query: 278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706 G+ G V G ++ + VGN LP+R+IP G V+ N+E G L R++G+ A +++ + D ++V+LPSG + I CRA IG V+ + KAG H P VRG MNP +HPHGGG IGH S Sbjct: 109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOBH (50S ribosomal protein L2 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3 Query: 278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706 G+ G V G ++ + VGN LP+R+IP G V+ N+E G L R++G+ A +++ + D ++V+LPSG + I CRA IG V+ + KAG H P VRG MNP +HPHGGG IGH S Sbjct: 109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOB1 (50S ribosomal protein L2 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3 Query: 278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706 G+ G V G ++ + VGN LP+R+IP G V+ N+E G L R++G+ A +++ + D ++V+LPSG + I CRA IG V+ + KAG H P VRG MNP +HPHGGG IGH S Sbjct: 109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BRASB (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 51/147 (34.69%), Postives = 77/147 (52.38%), Query Frame = -3 Query: 287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 727 ++ L + + G + G + GNV+P+ ++P G +V N+E +G G LAR++G YA I+ D D V+L SG ++++ CR IG V+ + KAG R N RGVAMNP++HPHGGG + G Sbjct: 102 AYILAPQRLAVGDTIVAGNYVDVKPGNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQIVGR--DQDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHN-----RGVAMNPIDHPHGGGEGRTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BRAJA (50S ribosomal protein L2 OS=Bradyrhizobium japonicum GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 50/152 (32.89%), Postives = 80/152 (52.63%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 730 +++ L + + G V G + GNV+P+ ++P G ++ N+E +G G LAR++G YA ++ D D ++L SG ++++ CR IG V+ + KAG RN W P RGV+MNP++HPHGGG + G Sbjct: 101 QAYILAPQRLAVGDSVVAGNYVDVKPGNVMPLGNMPVGTIIHNIEVKIGKGGQLARSAGTYAQLVGR--DQDYVIIRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAG---------RNRWLGRKPHNRGVSMNPIDHPHGGGEGRTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BACHD (50S ribosomal protein L2 OS=Bacillus halodurans GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 56/146 (38.36%), Postives = 79/146 (54.11%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730 + + L +G+ G + G +A + VGN LP+++IP G V+ N+E G G L R++G A ++ + D V+L SG + I + CRA IGQV G E L+ G A R+ W P VRG AMNP +HPHGGG Sbjct: 101 KRYILAPKGLKVGMTIESGPEADIKVGNALPLKNIPVGTVIHNIELKPGKGGQLVRSAGAEAQLL--GKEGDYVLVRLNSGETRYILATCRATIGQV---GNLEHELVNIGKA------GRSRWLGKRPTVRGSAMNPNDHPHGGG 235 The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bpback to top |