CF834718

Overview
NameCF834718
Unique NameCF834718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_MYCH7 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 7448) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 60/163 (36.81%), Postives = 82/163 (50.31%), Query Frame = -3
Query:  245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 730
            + + L  + +  GQ +  G K+ ++VGN LP+  IPEG  V N+E   G    L R++G +A I   + D     +KL SG  + I + CRA IG V     +   + KAG   HK        P VRG  MNP +HPHGGG   Q IG  S +    P G+K
Sbjct:  102 KRYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK-----GIRPTVRGSVMNPNDHPHGGGEGKQPIGRKSPL---TPWGKK 256          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_MYCH2 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 232) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 60/163 (36.81%), Postives = 82/163 (50.31%), Query Frame = -3
Query:  245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 730
            + + L  + +  GQ +  G K+ ++VGN LP+  IPEG  V N+E   G    L R++G +A I   + D     +KL SG  + I + CRA IG V     +   + KAG   HK        P VRG  MNP +HPHGGG   Q IG  S +    P G+K
Sbjct:  102 KRYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK-----GIRPTVRGSVMNPNDHPHGGGEGKQPIGRKSPL---TPWGKK 256          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOBM (50S ribosomal protein L2 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3
Query:  278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706
            G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:  109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOBL (50S ribosomal protein L2 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3
Query:  278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706
            G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:  109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOBJ (50S ribosomal protein L2 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3
Query:  278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706
            G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:  109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOBH (50S ribosomal protein L2 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3
Query:  278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706
            G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:  109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOB1 (50S ribosomal protein L2 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3
Query:  278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706
            G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:  109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BRASB (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 51/147 (34.69%), Postives = 77/147 (52.38%), Query Frame = -3
Query:  287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 727
            ++ L  + +  G  +  G    +  GNV+P+ ++P G +V N+E  +G  G LAR++G YA I+    D D   V+L SG ++++   CR  IG V+        + KAG      R   N     RGVAMNP++HPHGGG  +  G
Sbjct:  102 AYILAPQRLAVGDTIVAGNYVDVKPGNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQIVGR--DQDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHN-----RGVAMNPIDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BRAJA (50S ribosomal protein L2 OS=Bradyrhizobium japonicum GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 50/152 (32.89%), Postives = 80/152 (52.63%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 730
            +++ L  + +  G  V  G    +  GNV+P+ ++P G ++ N+E  +G  G LAR++G YA ++    D D   ++L SG ++++   CR  IG V+        + KAG         RN W    P  RGV+MNP++HPHGGG  +  G
Sbjct:  101 QAYILAPQRLAVGDSVVAGNYVDVKPGNVMPLGNMPVGTIIHNIEVKIGKGGQLARSAGTYAQLVGR--DQDYVIIRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAG---------RNRWLGRKPHNRGVSMNPIDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BACHD (50S ribosomal protein L2 OS=Bacillus halodurans GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 56/146 (38.36%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730
            + + L  +G+  G  +  G +A + VGN LP+++IP G V+ N+E   G  G L R++G  A ++    + D   V+L SG  + I + CRA IGQV   G  E  L+  G A       R+ W    P VRG AMNP +HPHGGG
Sbjct:  101 KRYILAPKGLKVGMTIESGPEADIKVGNALPLKNIPVGTVIHNIELKPGKGGQLVRSAGAEAQLL--GKEGDYVLVRLNSGETRYILATCRATIGQV---GNLEHELVNIGKA------GRSRWLGKRPTVRGSAMNPNDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_MYCH72.222e-1736.8150S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_MYCH22.222e-1736.8150S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_CLOBM2.222e-1738.1950S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CLOBL2.222e-1738.1950S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CLOBJ2.222e-1738.1950S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CLOBH2.222e-1738.1950S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CLOB12.222e-1738.1950S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_BRASB2.222e-1734.6950S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_BRAJA2.222e-1732.8950S ribosomal protein L2 OS=Bradyrhizobium japonic... [more]
RL2_BACHD2.222e-1738.3650S ribosomal protein L2 OS=Bacillus halodurans GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bp
CCCCTTTTTTAGAGCAATTAGCTAAACTTTAAGCCAACATAATTTAACAT
CAGGATCCTTCCAAAGATCCAAATCTGAACAAATTTTTCTAAGGTAATGA
TGCAGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTTG
TAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCT
TGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTG
GCCAGGAGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGT
GGTTACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGC
ACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACC
AGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAA
TCATCGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGC
TTGACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATA
ATCACCAGAAGCTCTAGCCAAAACACCGCGATCACCAACATGATGCTCAA
CGTTGCAAACAACAGCTCCTTCAGGGATAGATCTAACGGGCAGCACATTA
CCAACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGACCCGTGTA
CATACCCCTCAGCGGCAATGAAAAGCTCCTTT
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