CF834718

Overview
NameCF834718
Unique NameCF834718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ALKMQ (50S ribosomal protein L2 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 54/147 (36.73%), Postives = 80/147 (54.42%), Query Frame = -3
Query:  272 RGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTV 709
            +G+  G+ ++ G ++ + VGN LP+ +IP G ++ N+E   G  G +AR++G+ A +++   +     V+LPSG  + I   CRA IGQV         + KAG      + K    P VRG AMNP +HPHGGG     IG  S V
Sbjct:  108 KGLKVGEMIFSGPESDIKVGNALPLINIPVGTIIHNIEMKPGKGGQIARSAGNSAQLMA--KEGRYALVRLPSGEVRQILIECRATIGQVGNLDHENVTIGKAGR-----KRKMGIRPTVRGSAMNPNDHPHGGGEGRSPIGRPSPV 247          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ACIBY (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AYE) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = -3
Query:  245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 730
            R + +  +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:  101 RRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ACIBT (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rplB PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = -3
Query:  245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 730
            R + +  +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:  101 RRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ACIBS (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain SDF) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = -3
Query:  245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 730
            R + +  +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:  101 RRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ACIB5 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB0057) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = -3
Query:  245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 730
            R + +  +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:  101 RRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ACIB3 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB307-0294) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = -3
Query:  245 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 730
            R + +  +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:  101 RRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ACAM1 (50S ribosomal protein L2 OS=Acaryochloris marina (strain MBIC 11017) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 55/142 (38.73%), Postives = 76/142 (53.52%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            + + L  R +  G  +  G  A + VGN LP+  IP G  V NVE   G  G LARA+G  A +++   +     +KLPSG  ++    C A IGQV         + KAG   ++++ +R   PKVRG  MNPV+HPHGGG
Sbjct:  101 KRYILHPRNVQVGTTIVAGPDAPIEVGNALPLERIPLGTEVHNVELIPGKGGQLARAAGALAQVVA--KEGKMVTLKLPSGEVRLFQKECYATIGQVGNVESNNITIGKAGR--NRWKARR---PKVRGSVMNPVDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_TERTT (50S ribosomal protein L2 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 51/148 (34.46%), Postives = 81/148 (54.73%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + +  +G+  G F+  G  + + VGN LP+R++P G+V+  +E   G    LAR++G    +++      T R++  SG  + +   CRA +G+V+    + + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  101 RRYIIAPKGLKAGDFIESGDASAIKVGNTLPLRNVPVGSVIHCIELKPGKGAQLARSAGASVQLVAREGQYATLRLR--SGEMRKVEVECRATLGEVSNSEHSLRSLGKAG-----AKRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_STAAW (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MW2) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 55/139 (39.57%), Postives = 77/139 (55.40%), Query Frame = -3
Query:  305 RGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 709
            +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:  108 KGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_STAAS (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MSSA476) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 55/139 (39.57%), Postives = 77/139 (55.40%), Query Frame = -3
Query:  305 RGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 709
            +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:  108 KGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_ALKMQ2.222e-1736.7350S ribosomal protein L2 OS=Alkaliphilus metallire... [more]
RL2_ACIBY2.222e-1734.5750S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIBT2.222e-1734.5750S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIBS2.222e-1734.5750S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIB52.222e-1734.5750S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIB32.222e-1734.5750S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACAM12.222e-1738.7350S ribosomal protein L2 OS=Acaryochloris marina (... [more]
RL2_TERTT2.902e-1734.4650S ribosomal protein L2 OS=Teredinibacter turnera... [more]
RL2_STAAW2.902e-1739.5750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAAS2.902e-1739.5750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bp
CCCCTTTTTTAGAGCAATTAGCTAAACTTTAAGCCAACATAATTTAACAT
CAGGATCCTTCCAAAGATCCAAATCTGAACAAATTTTTCTAAGGTAATGA
TGCAGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTTG
TAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCT
TGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTG
GCCAGGAGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGT
GGTTACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGC
ACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACC
AGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAA
TCATCGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGC
TTGACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATA
ATCACCAGAAGCTCTAGCCAAAACACCGCGATCACCAACATGATGCTCAA
CGTTGCAAACAACAGCTCCTTCAGGGATAGATCTAACGGGCAGCACATTA
CCAACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGACCCGTGTA
CATACCCCTCAGCGGCAATGAAAAGCTCCTTT
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