CF834718
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_STAA1 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17 Identity = 55/139 (39.57%), Postives = 77/139 (55.40%), Query Frame = -3 Query: 305 RGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 709 +G+ GQ V G +A + VGN LP+++IP G VV N+E G G +AR++G A ++ + ++L SG ++I S CRA IGQV G + L+ G A R+ W P VRG MNP +HPHGGG Sbjct: 108 KGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_PSEA6 (50S ribosomal protein L2 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rplB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17 Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 R + L +G G + G A + GN LP+R+IP G V +E G +AR++G YA I++ T R++ SG + + + CRA IG++ + L KAG N + R P VRGVAMNPV+HPHGGG + G Sbjct: 101 RRYILAPKGAKAGDQIQSGSDAAIKAGNSLPMRNIPVGTTVHAIEMKPGKGAQIARSAGQYAQILARAEGYVTLRLR--SGEVRRVLADCRATIGEIGNAEHMLRSLGKAGANRWRGIR------PTVRGVAMNPVDHPHGGGEGRTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_NITHX (50S ribosomal protein L2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17 Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 +++ L + + G V G + GNV+P+ ++P G +V NVE +G G LAR++G YA I+ D+D ++L SG ++++ CR IG V+ + KAG R N RGV MNP++HPHGGG + G Sbjct: 101 QAYILAPQRLAVGDTVVAGNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGR--DHDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSIGKAGRTRWMGRRPHN-----RGVVMNPIDHPHGGGEGRTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_MARAV (50S ribosomal protein L2 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rplB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17 Identity = 56/148 (37.84%), Postives = 84/148 (56.76%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 R + + +GM G V G A + VG+ LP+R+IP G+V+ VE G LAR++G +++ + ++L SG + + CRA +G+V+ + K L KAG + ++R KR P VRGVAMNPV+HPHGGG + G Sbjct: 101 RRYIIAPKGMKAGDPVRSGVDAPIKVGSTLPLRNIPVGSVIHCVELKPGKGAQLARSAGASVQLVAR--EGAYATIRLRSGEMRKVLVDCRATLGEVSNSEHSLKQLGKAGAS--RWRGKR---PTVRGVAMNPVDHPHGGGEGRTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_LEUCK (50S ribosomal protein L2 OS=Leuconostoc citreum (strain KM20) GN=rplB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17 Identity = 57/143 (39.86%), Postives = 81/143 (56.64%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730 +S+ L +G+ G V G A + VGN LP+ +IPEG ++ N+E G G LAR++G A I+ D V+L SG +++ + RA IG+V G E L+ G A +++R KR P VRG MNP +HPHGGG Sbjct: 101 KSYILAPKGLKVGDKVQSGPDADIKVGNALPLSNIPEGTLIHNIELKPGKGGQLARSAGTSAQIL--GKDGKYVIVRLTSGEVRLVLATNRATIGEV---GNAEHSLINWGKAGRNRWRGKR---PHVRGSVMNPNDHPHGGG 235
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_LACLS (50S ribosomal protein L2 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17 Identity = 57/152 (37.50%), Postives = 79/152 (51.97%), Query Frame = -3 Query: 278 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 730 +S+ L +G+ G V G A + VGN LP+ +IP G ++ N+E G G L R++G A ++ + T V+L SG ++I S CRA IG V ++ L KAG H P VRG MNP +HPHGGG Q +G S Sbjct: 101 KSYILAAKGLEVGMTVVSGPDADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_LACLM (50S ribosomal protein L2 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17 Identity = 57/152 (37.50%), Postives = 79/152 (51.97%), Query Frame = -3 Query: 278 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 730 +S+ L +G+ G V G A + VGN LP+ +IP G ++ N+E G G L R++G A ++ + T V+L SG ++I S CRA IG V ++ L KAG H P VRG MNP +HPHGGG Q +G S Sbjct: 101 KSYILAAKGLEVGMTVVSGPDADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_LACLA (50S ribosomal protein L2 OS=Lactococcus lactis subsp. lactis GN=rplB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17 Identity = 57/152 (37.50%), Postives = 80/152 (52.63%), Query Frame = -3 Query: 278 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 730 +S+ L +G+ G V G +A + VGN LP+ +IP G ++ N+E G G L R++G A ++ + T V+L SG ++I S CRA IG V ++ L KAG H P VRG MNP +HPHGGG Q +G S Sbjct: 101 KSYILAPKGLEVGMTVVSGPEADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_DECAR (50S ribosomal protein L2 OS=Dechloromonas aromatica (strain RCB) GN=rplB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17 Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730 R + + +GM GQ + G +A + GN LP+R+IP G +C VE G LAR++G +++ + +++L SG + + CRA IG+V G E L K G A ++R R P VRG AMNPV+HPHGGG Sbjct: 101 RRYIIANKGMVVGQPIMSGSEAPIKSGNALPIRNIPVGTTICCVEMLPGKGAQLARSAGTSVQLLAR--EGTYAQIRLRSGEVRRVHVECRATIGEV---GNEEHNLRKIGKAGAMRWRGVR---PTVRGTAMNPVDHPHGGG 235
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOBK (50S ribosomal protein L2 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17 Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3 Query: 278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706 G+ G V G ++ + VGN LP+R+IP G V+ N+E G L R++G+ A +++ + D ++V+LPSG + I CRA IG V+ + KAG H P VRG MNP +HPHGGG IGH S Sbjct: 109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAPGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTNEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245 The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bpback to top |