CF834718

Overview
NameCF834718
Unique NameCF834718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_STAA1 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 55/139 (39.57%), Postives = 77/139 (55.40%), Query Frame = -3
Query:  305 RGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 709
            +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:  108 KGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_PSEA6 (50S ribosomal protein L2 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + L  +G   G  +  G  A +  GN LP+R+IP G  V  +E   G    +AR++G YA I++      T R++  SG  + + + CRA IG++       + L KAG N +   R      P VRGVAMNPV+HPHGGG  +  G
Sbjct:  101 RRYILAPKGAKAGDQIQSGSDAAIKAGNSLPMRNIPVGTTVHAIEMKPGKGAQIARSAGQYAQILARAEGYVTLRLR--SGEVRRVLADCRATIGEIGNAEHMLRSLGKAGANRWRGIR------PTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_NITHX (50S ribosomal protein L2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            +++ L  + +  G  V  G    +  GNV+P+ ++P G +V NVE  +G  G LAR++G YA I+    D+D   ++L SG ++++   CR  IG V+        + KAG      R   N     RGV MNP++HPHGGG  +  G
Sbjct:  101 QAYILAPQRLAVGDTVVAGNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGR--DHDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSIGKAGRTRWMGRRPHN-----RGVVMNPIDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_MARAV (50S ribosomal protein L2 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 56/148 (37.84%), Postives = 84/148 (56.76%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + +  +GM  G  V  G  A + VG+ LP+R+IP G+V+  VE   G    LAR++G    +++   +     ++L SG  + +   CRA +G+V+    + K L KAG +  ++R KR   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  101 RRYIIAPKGMKAGDPVRSGVDAPIKVGSTLPLRNIPVGSVIHCVELKPGKGAQLARSAGASVQLVAR--EGAYATIRLRSGEMRKVLVDCRATLGEVSNSEHSLKQLGKAGAS--RWRGKR---PTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_LEUCK (50S ribosomal protein L2 OS=Leuconostoc citreum (strain KM20) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 57/143 (39.86%), Postives = 81/143 (56.64%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            +S+ L  +G+  G  V  G  A + VGN LP+ +IPEG ++ N+E   G  G LAR++G  A I+    D     V+L SG  +++ +  RA IG+V   G  E  L+  G A  +++R KR   P VRG  MNP +HPHGGG
Sbjct:  101 KSYILAPKGLKVGDKVQSGPDADIKVGNALPLSNIPEGTLIHNIELKPGKGGQLARSAGTSAQIL--GKDGKYVIVRLTSGEVRLVLATNRATIGEV---GNAEHSLINWGKAGRNRWRGKR---PHVRGSVMNPNDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_LACLS (50S ribosomal protein L2 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 57/152 (37.50%), Postives = 79/152 (51.97%), Query Frame = -3
Query:  278 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 730
            +S+ L  +G+  G  V  G  A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HPHGGG   Q +G  S
Sbjct:  101 KSYILAAKGLEVGMTVVSGPDADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_LACLM (50S ribosomal protein L2 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 57/152 (37.50%), Postives = 79/152 (51.97%), Query Frame = -3
Query:  278 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 730
            +S+ L  +G+  G  V  G  A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HPHGGG   Q +G  S
Sbjct:  101 KSYILAAKGLEVGMTVVSGPDADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_LACLA (50S ribosomal protein L2 OS=Lactococcus lactis subsp. lactis GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 57/152 (37.50%), Postives = 80/152 (52.63%), Query Frame = -3
Query:  278 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 730
            +S+ L  +G+  G  V  G +A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HPHGGG   Q +G  S
Sbjct:  101 KSYILAPKGLEVGMTVVSGPEADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_DECAR (50S ribosomal protein L2 OS=Dechloromonas aromatica (strain RCB) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            R + +  +GM  GQ +  G +A +  GN LP+R+IP G  +C VE   G    LAR++G    +++   +    +++L SG  + +   CRA IG+V   G  E  L K G A   ++R  R   P VRG AMNPV+HPHGGG
Sbjct:  101 RRYIIANKGMVVGQPIMSGSEAPIKSGNALPIRNIPVGTTICCVEMLPGKGAQLARSAGTSVQLLAR--EGTYAQIRLRSGEVRRVHVECRATIGEV---GNEEHNLRKIGKAGAMRWRGVR---PTVRGTAMNPVDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOBK (50S ribosomal protein L2 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = -3
Query:  278 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 706
            G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:  109 GLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAPGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTNEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STAA12.902e-1739.5750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_PSEA62.902e-1736.9150S ribosomal protein L2 OS=Pseudoalteromonas atla... [more]
RL2_NITHX2.902e-1734.4650S ribosomal protein L2 OS=Nitrobacter hamburgens... [more]
RL2_MARAV2.902e-1737.8450S ribosomal protein L2 OS=Marinobacter aquaeolei... [more]
RL2_LEUCK2.902e-1739.8650S ribosomal protein L2 OS=Leuconostoc citreum (s... [more]
RL2_LACLS2.902e-1737.5050S ribosomal protein L2 OS=Lactococcus lactis sub... [more]
RL2_LACLM2.902e-1737.5050S ribosomal protein L2 OS=Lactococcus lactis sub... [more]
RL2_LACLA2.902e-1737.5050S ribosomal protein L2 OS=Lactococcus lactis sub... [more]
RL2_DECAR2.902e-1738.4650S ribosomal protein L2 OS=Dechloromonas aromatic... [more]
RL2_CLOBK2.902e-1738.1950S ribosomal protein L2 OS=Clostridium botulinum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bp
CCCCTTTTTTAGAGCAATTAGCTAAACTTTAAGCCAACATAATTTAACAT
CAGGATCCTTCCAAAGATCCAAATCTGAACAAATTTTTCTAAGGTAATGA
TGCAGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTTG
TAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCT
TGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTG
GCCAGGAGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGT
GGTTACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGC
ACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACC
AGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAA
TCATCGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGC
TTGACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATA
ATCACCAGAAGCTCTAGCCAAAACACCGCGATCACCAACATGATGCTCAA
CGTTGCAAACAACAGCTCCTTCAGGGATAGATCTAACGGGCAGCACATTA
CCAACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGACCCGTGTA
CATACCCCTCAGCGGCAATGAAAAGCTCCTTT
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