CF834718

Overview
NameCF834718
Unique NameCF834718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CHLSY (50S ribosomal protein L2 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = -3
Query:  305 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 706
            G+  G  V  G  A + VGN LP+ +IP G  + N+E  +G  GVL R++G  A +++   + D   V++PSG  ++I   C A IGQV         L KAG +  ++  +R   P+VRG AMNP +HPHGGG
Sbjct:  109 GLKVGDTVMSGPDAEIRVGNALPLSAIPLGTQIHNIELEIGRGGVLVRSAGTAAQLMA--KEGDYAIVRMPSGEMRMIHLRCMATIGQVGNVDHQNIRLGKAGRS--RWLGRR---PRVRGAAMNPRDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CHLPB (50S ribosomal protein L2 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 56/165 (33.94%), Postives = 85/165 (51.52%), Query Frame = -3
Query:  248 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 730
            + + L  +G+  G  ++ G K  + VGN +P+++IP GA V N+E   G  G +AR++G +A + +   D+ T  +KLPSG  + +   CRA IG +         L KAG         R+ W    P+ RG+AMNPV+HP GGG  +           +P GQ
Sbjct:  101 KRYILAPKGLKVGDVLHSGDKVDIKVGNSMPLKNIPLGADVHNIELKQGKGGQMARSAGAFATLAAKEGDHAT--LKLPSGEIRKVRIECRATIGGIGNDDHENIVLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGGGEGRSKSGGGRKHPKSPWGQ 254          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CHLAA (50S ribosomal protein L2 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = -3
Query:  305 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 706
            G+  G  V  G  A + VGN LP+ +IP G  + N+E  +G  GVL R++G  A +++   + D   V++PSG  ++I   C A IGQV         L KAG +  ++  +R   P+VRG AMNP +HPHGGG
Sbjct:  109 GLKVGDTVMSGPDAEIRVGNALPLSAIPLGTQIHNIELEIGRGGVLVRSAGTAAQLMA--KEGDYAIVRMPSGEMRMIHLRCMATIGQVGNVDHQNIRLGKAGRS--RWLGRR---PRVRGAAMNPRDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CELJU (50S ribosomal protein L2 OS=Cellvibrio japonicus (strain Ueda107) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 57/150 (38.00%), Postives = 81/150 (54.00%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + +  +G+  G  +  G  A + VGN LPVR+IP G+V+  VE   G    LAR++G  A +++   D     ++L SG  + + S CRA +G+V+      + L KAG        KR     P VRGVAMNPV+HPHGGG  +  G
Sbjct:  101 RRYIIAPKGLSAGDKIESGNAAAIKVGNTLPVRNIPLGSVIHCVELKPGKGAQLARSAGASAQLVA--KDGAYVTLRLRSGEMRKVLSDCRATLGEVSNTEHNLRSLGKAG-------AKRWLGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BRASO (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain ORS278) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 50/147 (34.01%), Postives = 78/147 (53.06%), Query Frame = -3
Query:  287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 727
            ++ L  + +  G  +  G    +  GNV+P+ ++P G +V N+E  +G  G LAR++G YA ++    D+D   V+L SG ++++   CR  IG V+        + KAG      R   N     RGVAMNP++HPHGGG  +  G
Sbjct:  102 AYILAPQRLAVGDTIVAGNYVDVKPGNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQLVGR--DHDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHN-----RGVAMNPIDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BARHE (50S ribosomal protein L2 OS=Bartonella henselae GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 727
            S+ L  + +  G  V  G    +  GN +P+ ++P G ++ NVE   G  G +AR++G YA ++    D     ++L SG ++++ SGC A +G V+          KAG +  ++R +R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  102 SYILAPQRLDVGDSVIAGSNVDIKPGNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGR--DQGMAILRLNSGEQRLVSSGCFATVGAVSNPDHANINDGKAGRS--RWRGRR---PHVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_OLTVI (50S ribosomal protein L2, chloroplastic OS=Oltmannsiellopsis viridis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 53/142 (37.32%), Postives = 79/142 (55.63%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            + + L  RG+  G  +     A ++ GN LP+++IP G  V NVE   G  G LARA+G  A I++   + +   ++LPSG  +++ + C A +GQV   G T+   +  G A  K  + +   P VRGV MNP +HPHGGG
Sbjct:  101 KRYILHPRGLNVGSSIISSLNAPVLTGNALPLKNIPLGGEVHNVELQPGAGGQLARAAGAVAQIVA--KEGNLVTLRLPSGEVRLVSNECWATVGQV---GNTDAINMVVGKAGRKRWLGKR--PHVRGVVMNPCDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_ADICA (50S ribosomal protein L2, chloroplastic OS=Adiantum capillus-veneris GN=rpl2 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 51/142 (35.92%), Postives = 79/142 (55.63%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            + + L  +GM  G  V     A++  GN LP+  +P G ++ N+E   G    L R++G  A +I+   +     ++LPSG  +++P  C A +G+V     + K L KAG+   ++  +R   PKVRG AMNPV+HPHGGG
Sbjct:   98 KRYILHPKGMGIGDIVLSSPNASISAGNALPLTKMPLGTIIHNIELKSGRGAQLVRSAGTVAKVIAK--EGRLATLRLPSGEIRLVPRDCLASVGRVGNVDISNKGLKKAGSK--RWLGRR---PKVRGSAMNPVDHPHGGG 232          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_THISH (50S ribosomal protein L2 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + +  +G+  G  +  G  A +  GN LP+R+IP G VV  +E   G    +AR++G    +++    + T R++  SG  + +P+ CRA IG+V+    +E  L K G A  K  +     P VRG AMNPV+HPHGGG  ++ G
Sbjct:  101 RRYVIAPKGVQAGDQLLSGTNAPIRAGNTLPLRNIPVGTVVHCIEMKPGKGAQMARSAGAAVQLVAREGQHATLRLR--SGEMRKVPADCRATIGEVS---NSEHSLRKFGKAGAKRWL--GIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 53/142 (37.32%), Postives = 77/142 (54.23%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            + + L  R +  G  +  G +A   +GN +P+  IP G VV NVE + G  G + RA+G  A +++   +     +KLPSG  ++I   C A IGQ+         L KAG +  ++  +R   PKVRG  MNPV+HPHGGG
Sbjct:  107 KRYILAPRNLQVGSTIMAGPEAPFEIGNAMPLERIPLGTVVHNVELYPGRGGQMVRAAGAGAQVVAR--EGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRS--RWLGRR---PKVRGSVMNPVDHPHGGG 241          
The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_CHLSY2.902e-1739.5550S ribosomal protein L2 OS=Chloroflexus aurantiac... [more]
RL2_CHLPB2.902e-1733.9450S ribosomal protein L2 OS=Chlorobium phaeobacter... [more]
RL2_CHLAA2.902e-1739.5550S ribosomal protein L2 OS=Chloroflexus aurantiac... [more]
RL2_CELJU2.902e-1738.0050S ribosomal protein L2 OS=Cellvibrio japonicus (... [more]
RL2_BRASO2.902e-1734.0150S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_BARHE2.902e-1735.3750S ribosomal protein L2 OS=Bartonella henselae GN... [more]
RK2_OLTVI2.902e-1737.3250S ribosomal protein L2, chloroplastic OS=Oltmann... [more]
RK2_ADICA2.902e-1735.9250S ribosomal protein L2, chloroplastic OS=Adiantu... [more]
RL2_THISH3.790e-1735.8150S ribosomal protein L2 OS=Thioalkalivibrio sp. (... [more]
RL2_SYNJB3.790e-1737.3250S ribosomal protein L2 OS=Synechococcus sp. GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bp
CCCCTTTTTTAGAGCAATTAGCTAAACTTTAAGCCAACATAATTTAACAT
CAGGATCCTTCCAAAGATCCAAATCTGAACAAATTTTTCTAAGGTAATGA
TGCAGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTTG
TAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCT
TGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTG
GCCAGGAGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGT
GGTTACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGC
ACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACC
AGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAA
TCATCGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGC
TTGACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATA
ATCACCAGAAGCTCTAGCCAAAACACCGCGATCACCAACATGATGCTCAA
CGTTGCAAACAACAGCTCCTTCAGGGATAGATCTAACGGGCAGCACATTA
CCAACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGACCCGTGTA
CATACCCCTCAGCGGCAATGAAAAGCTCCTTT
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