CF834718
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_SILST (50S ribosomal protein L2 OS=Silicibacter sp. (strain TM1040) GN=rplB PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17 Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 +++ L + + G V KA + GN +P +P G +V N+E G G +ARA+G YA + D +++L SG +++ C A +G V+ + + KAG HK + P VRGV MNP++HPHGGG + G Sbjct: 101 QAYILAPQRLAVGDKVIASAKADIKPGNAMPFSGMPIGTIVHNIEMKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNYGKAGRMRHKGK-----RPSVRGVVMNPIDHPHGGGEGRTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ORITI (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplB PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17 Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = -3 Query: 287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 727 S+ L R + G + KA + VGN LP+ IP G ++ N+E G G +AR++G YAV++ N D+ ++K SG + I RA +G V+ KAG ++ +R P VRGVAMNPV+HPHGGG + G Sbjct: 102 SYILSPRNLNVGDKIISSDKAEINVGNCLPLEVIPVGTIIHNIEIKPGKGGQVARSAGTYAVLL--NKDSGYAQIKFRSGEVRRISLASRATVGSVSNIDHKNISYGKAGRV--RWLGRR---PVVRGVAMNPVDHPHGGGEGKTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_METPB (50S ribosomal protein L2 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplB PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17 Identity = 55/157 (35.03%), Postives = 81/157 (51.59%), Query Frame = -3 Query: 272 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 730 +S+ L + + G V G+ + GN P+ S+P G +V NVE +G G +AR++G+YA I+ D ++L SG ++++ C A +G V+ L KAG RN W P RGVAMNPV+HPHGGG + G + V Sbjct: 102 QSYILAPQRLSPGDKVVAGESVDVKPGNAGPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFASVGAVSNPDHMNISLGKAG---------RNRWLGKRPHNRGVAMNPVDHPHGGGEGRTSGGRNPV 247
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CALS8 (50S ribosomal protein L2 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplB PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17 Identity = 56/154 (36.36%), Postives = 79/154 (51.30%), Query Frame = -3 Query: 284 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 730 R + L G+ G V G A + VGN LP++ IP G ++ N+E + G G L +++G A +++ + ++LPSG + + CRA IGQV + KAG R W P VRG AMNPV+HPHGGG + IGH Sbjct: 102 RRYILAPEGLKVGDTVMSGPDADIKVGNALPLKYIPVGTMIHNIELYPGRGGQLVKSAGAVAQLMA--KEGKYALIRLPSGELRYVSQECRATIGQVGNLDHENVRIGKAG---------RKRWMGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 244
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 54/152 (35.53%), Postives = 84/152 (55.26%), Query Frame = -3 Query: 272 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 727 S+ L + G V G + +GN LP+R+IP G ++ N+E + G G + R++G A +IS + +N +KLPSG ++ P+ A IG ++ + KAG + ++ +R P VRGVAMNPV+HPHGGG + G +V Sbjct: 102 SYILAPHDLKVGDTVITGNDIDIRIGNTLPLRNIPIGTMIHNIELNPGKGGKIVRSAGSSAQLISKD-ENGFCMLKLPSGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRS--RWMGRR---PIVRGVAMNPVDHPHGGGEGKTSGGRPSV 247
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 56/128 (43.75%), Postives = 70/128 (54.69%), Query Frame = -3 Query: 272 VGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 655 VGN +P+ I G V ++E H G LARA+G YA II V+LPSG +K+I S CRA IG V+ + L KAG + R P VRGVAMNPV+HPHGGG + G +V Sbjct: 360 VGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 56/128 (43.75%), Postives = 70/128 (54.69%), Query Frame = -3 Query: 272 VGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 655 VGN +P+ I G V ++E H G LARA+G YA II V+LPSG +K+I S CRA IG V+ + L KAG + R P VRGVAMNPV+HPHGGG + G +V Sbjct: 360 VGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 56/128 (43.75%), Postives = 70/128 (54.69%), Query Frame = -3 Query: 272 VGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 655 VGN +P+ I G V ++E H G LARA+G YA II V+LPSG +K+I S CRA IG V+ + L KAG + R P VRGVAMNPV+HPHGGG + G +V Sbjct: 360 VGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_SYNP2 (50S ribosomal protein L2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730 + + L G+ G + G++A +GN LP+ IP G + N+E + G G + R++G +A +++ + D +KLPS +++ C A IG+V L KAG H R P+VRG MNPV+HPHGGG Sbjct: 101 KRYILQPAGLGVGDTIIAGEEAPYEIGNALPLYKIPLGTEIHNIELYAGRGGQMVRSAGAFAQLVA--KEGDYVTIKLPSKEVRMVRKECYATIGKVGNAEARNLKLGKAGRTRHLGR-----RPQVRGSVMNPVDHPHGGG 235
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_NITEC (50S ribosomal protein L2 OS=Nitrosomonas eutropha (strain C91) GN=rplB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 51/142 (35.92%), Postives = 78/142 (54.93%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730 R + + + + G +V G + + GN LP+R+IP G+V+ +E G LAR++G A +++ + D ++++L SG + I CRA IG+V + + KAG R P VRGVAMNPV+HPHGGG Sbjct: 101 RKYIIAAKDIEVGSYVVNGSGSPVKTGNALPIRNIPVGSVIHCIELKPGKGAQLARSAGSSAQLMAR--EGDYSQIRLRSGEIRKIHINCRATIGEVGNSEHNLQSIGKAGAVRW-----RGIRPTVRGVAMNPVDHPHGGG 235 The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bpback to top |