CF834718

Overview
NameCF834718
Unique NameCF834718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_SILST (50S ribosomal protein L2 OS=Silicibacter sp. (strain TM1040) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            +++ L  + +  G  V    KA +  GN +P   +P G +V N+E   G  G +ARA+G YA  +    D    +++L SG  +++   C A +G V+    + +   KAG   HK +      P VRGV MNP++HPHGGG  +  G
Sbjct:  101 QAYILAPQRLAVGDKVIASAKADIKPGNAMPFSGMPIGTIVHNIEMKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNYGKAGRMRHKGK-----RPSVRGVVMNPIDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ORITI (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = -3
Query:  287 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 727
            S+ L  R +  G  +    KA + VGN LP+  IP G ++ N+E   G  G +AR++G YAV++  N D+   ++K  SG  + I    RA +G V+          KAG    ++  +R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  102 SYILSPRNLNVGDKIISSDKAEINVGNCLPLEVIPVGTIIHNIEIKPGKGGQVARSAGTYAVLL--NKDSGYAQIKFRSGEVRRISLASRATVGSVSNIDHKNISYGKAGRV--RWLGRR---PVVRGVAMNPVDHPHGGGEGKTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_METPB (50S ribosomal protein L2 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 55/157 (35.03%), Postives = 81/157 (51.59%), Query Frame = -3
Query:  272 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 730
            +S+ L  + +  G  V  G+   +  GN  P+ S+P G +V NVE  +G  G +AR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG         RN W    P  RGVAMNPV+HPHGGG  +  G  + V
Sbjct:  102 QSYILAPQRLSPGDKVVAGESVDVKPGNAGPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFASVGAVSNPDHMNISLGKAG---------RNRWLGKRPHNRGVAMNPVDHPHGGGEGRTSGGRNPV 247          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CALS8 (50S ribosomal protein L2 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 56/154 (36.36%), Postives = 79/154 (51.30%), Query Frame = -3
Query:  284 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 730
            R + L   G+  G  V  G  A + VGN LP++ IP G ++ N+E + G  G L +++G  A +++   +     ++LPSG  + +   CRA IGQV         + KAG         R  W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:  102 RRYILAPEGLKVGDTVMSGPDADIKVGNALPLKYIPVGTMIHNIELYPGRGGQLVKSAGAVAQLMA--KEGKYALIRLPSGELRYVSQECRATIGQVGNLDHENVRIGKAG---------RKRWMGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 244          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 54/152 (35.53%), Postives = 84/152 (55.26%), Query Frame = -3
Query:  272 SFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 727
            S+ L    +  G  V  G    + +GN LP+R+IP G ++ N+E + G  G + R++G  A +IS + +N    +KLPSG  ++ P+   A IG ++        + KAG +  ++  +R   P VRGVAMNPV+HPHGGG  +  G   +V
Sbjct:  102 SYILAPHDLKVGDTVITGNDIDIRIGNTLPLRNIPIGTMIHNIELNPGKGGKIVRSAGSSAQLISKD-ENGFCMLKLPSGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRS--RWMGRR---PIVRGVAMNPVDHPHGGGEGKTSGGRPSV 247          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 56/128 (43.75%), Postives = 70/128 (54.69%), Query Frame = -3
Query:  272 VGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 655
            VGN +P+  I  G  V ++E H G    LARA+G YA II          V+LPSG +K+I S CRA IG V+      + L KAG +    R      P VRGVAMNPV+HPHGGG  +  G   +V
Sbjct:  360 VGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 56/128 (43.75%), Postives = 70/128 (54.69%), Query Frame = -3
Query:  272 VGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 655
            VGN +P+  I  G  V ++E H G    LARA+G YA II          V+LPSG +K+I S CRA IG V+      + L KAG +    R      P VRGVAMNPV+HPHGGG  +  G   +V
Sbjct:  360 VGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 56/128 (43.75%), Postives = 70/128 (54.69%), Query Frame = -3
Query:  272 VGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 655
            VGN +P+  I  G  V ++E H G    LARA+G YA II          V+LPSG +K+I S CRA IG V+      + L KAG +    R      P VRGVAMNPV+HPHGGG  +  G   +V
Sbjct:  360 VGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ--CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRR-----PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 480          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_SYNP2 (50S ribosomal protein L2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            + + L   G+  G  +  G++A   +GN LP+  IP G  + N+E + G  G + R++G +A +++   + D   +KLPS   +++   C A IG+V         L KAG   H  R      P+VRG  MNPV+HPHGGG
Sbjct:  101 KRYILQPAGLGVGDTIIAGEEAPYEIGNALPLYKIPLGTEIHNIELYAGRGGQMVRSAGAFAQLVA--KEGDYVTIKLPSKEVRMVRKECYATIGKVGNAEARNLKLGKAGRTRHLGR-----RPQVRGSVMNPVDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_NITEC (50S ribosomal protein L2 OS=Nitrosomonas eutropha (strain C91) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 51/142 (35.92%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 730
            R + +  + +  G +V  G  + +  GN LP+R+IP G+V+  +E   G    LAR++G  A +++   + D ++++L SG  + I   CRA IG+V       + + KAG         R   P VRGVAMNPV+HPHGGG
Sbjct:  101 RKYIIAAKDIEVGSYVVNGSGSPVKTGNALPIRNIPVGSVIHCIELKPGKGAQLARSAGSSAQLMAR--EGDYSQIRLRSGEIRKIHINCRATIGEVGNSEHNLQSIGKAGAVRW-----RGIRPTVRGVAMNPVDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SILST3.790e-1733.1150S ribosomal protein L2 OS=Silicibacter sp. (stra... [more]
RL2_ORITI3.790e-1737.4150S ribosomal protein L2 OS=Orientia tsutsugamushi... [more]
RL2_METPB3.790e-1735.0350S ribosomal protein L2 OS=Methylobacterium popul... [more]
RL2_CALS83.790e-1736.3650S ribosomal protein L2 OS=Caldicellulosiruptor s... [more]
RM02_RECAM4.950e-1735.5360S ribosomal protein L2, mitochondrial OS=Reclino... [more]
RM02_ORYSJ4.950e-1743.7560S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI4.950e-1743.7560S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA4.950e-1743.7560S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RL2_SYNP24.950e-1734.5150S ribosomal protein L2 OS=Synechococcus sp. (str... [more]
RL2_NITEC4.950e-1735.9250S ribosomal protein L2 OS=Nitrosomonas eutropha ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bp
CCCCTTTTTTAGAGCAATTAGCTAAACTTTAAGCCAACATAATTTAACAT
CAGGATCCTTCCAAAGATCCAAATCTGAACAAATTTTTCTAAGGTAATGA
TGCAGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTTG
TAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCT
TGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTG
GCCAGGAGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGT
GGTTACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGC
ACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACC
AGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAA
TCATCGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGC
TTGACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATA
ATCACCAGAAGCTCTAGCCAAAACACCGCGATCACCAACATGATGCTCAA
CGTTGCAAACAACAGCTCCTTCAGGGATAGATCTAACGGGCAGCACATTA
CCAACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGACCCGTGTA
CATACCCCTCAGCGGCAATGAAAAGCTCCTTT
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