CF834718
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_METS4 (50S ribosomal protein L2 OS=Methylobacterium sp. (strain 4-46) GN=rplB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 52/152 (34.21%), Postives = 80/152 (52.63%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 730 +S+ L + + G V G++ + GN +P+ ++P G +V NVE +G G LAR++G+YA I+ D ++L SG ++++ C A +G V+ L KAG R W P RGVAMNP++HPHGGG + G Sbjct: 102 QSYILAPQRVKAGDRVVSGEQVDIKPGNAMPIGNMPVGTIVHNVELKIGKGGALARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCYATVGAVSNPDHMNISLGKAG---------RKRWLGRRPHNRGVAMNPIDHPHGGGEGRTSG 242
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOTH (50S ribosomal protein L2 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 54/150 (36.00%), Postives = 79/150 (52.67%), Query Frame = -3 Query: 272 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQH-IGHASTV 706 G+ G V G+ A + GN LP+ +IP G + N+E G G L R++G+ A +++ + + +++LPSG +++ C+A IGQV + KAG R W P VRGV MNPV+HPHGGG + IG S V Sbjct: 109 GLKVGDIVESGENADIKPGNALPLENIPVGTEIHNIELKPGKGGQLVRSAGNVAQLMA--KEGNYAQIRLPSGEVRMVSLKCKATIGQVGNIDHENVSIGKAG---------RKRWMGIRPTVRGVVMNPVDHPHGGGEGKSPIGRPSPV 247
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BACCR (50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 55/146 (37.67%), Postives = 78/146 (53.42%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730 + + L + + G V G +A + +GN LP+ +IP G VV N+E G G L R++G A ++ + V+L SG +++ S CRA IGQV G + L+K G A R+ W P VRG MNPV+HPHGGG Sbjct: 101 KRYILAPKSLEVGMEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRASIGQV---GNEQHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BACC4 (50S ribosomal protein L2 OS=Bacillus cereus (strain B4264) GN=rplB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 55/146 (37.67%), Postives = 78/146 (53.42%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730 + + L + + G V G +A + +GN LP+ +IP G VV N+E G G L R++G A ++ + V+L SG +++ S CRA IGQV G + L+K G A R+ W P VRG MNPV+HPHGGG Sbjct: 101 KRYILAPKSLEVGMEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRASIGQV---GNEQHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BACC2 (50S ribosomal protein L2 OS=Bacillus cereus (strain G9842) GN=rplB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 55/146 (37.67%), Postives = 78/146 (53.42%), Query Frame = -3 Query: 305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730 + + L + + G V G +A + +GN LP+ +IP G VV N+E G G L R++G A ++ + V+L SG +++ S CRA IGQV G + L+K G A R+ W P VRG MNPV+HPHGGG Sbjct: 101 KRYILAPKSLEVGMEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRASIGQV---GNEQHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ALCBS (50S ribosomal protein L2 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rplB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 51/148 (34.46%), Postives = 81/148 (54.73%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 R + L +G+ + G+ A + +GN LP+R+IP G+ + NVE G G +AR++G +++ D ++L SG + + + C+A IG+V+ + + L KAG + R P VRG AMNPV+HPHGGG + G Sbjct: 101 RRYILAPKGLKAEDRIQSGEDAPIKLGNALPLRNIPLGSTIHNVEMKPGKGGQIARSAGTSVQLLA--KDGQYVTLRLRSGEMRKVHADCKATIGEVSNSEHSLRSLGKAG-----AKRWRGVRPTVRGAAMNPVDHPHGGGEGRSSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_PROWI (50S ribosomal protein L2, plastid OS=Prototheca wickerhamii GN=rpl2 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 58/154 (37.66%), Postives = 82/154 (53.25%), Query Frame = -3 Query: 272 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQ-HIGHASTV 730 + + L G+ G+ V A + VGN LP+ +IP G V NVE G G L R++G A I++ + + LPSG ++IP C A +G+V + L KAG + ++ +R P VRG AMNPV+HPHGGG + IG A V Sbjct: 101 KRYILSPTGLKVGEMVIASPNAPITVGNTLPLYNIPLGTSVHNVELQPGAGGQLVRSAGSVAQIVA--KEGQWATLHLPSGEYRLIPQKCWATVGRVGNLDNSNITLGKAGRS--RWLSQR---PHVRGSAMNPVDHPHGGGEGKAPIGRARPV 247
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_MESVI (50S ribosomal protein L2, chloroplastic OS=Mesostigma viride GN=rpl2 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 56/135 (41.48%), Postives = 74/135 (54.81%), Query Frame = -3 Query: 305 RGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 709 RG+ G+ + +A L VGN LP+ IP G + N+E G G LARA+G A +I+ + V+LPSG ++I C A IGQV + KAG ++ KR P VRGV MNPV+HPHGGG Sbjct: 107 RGLSVGKEIVSSVEAPLSVGNSLPLNKIPLGTGIHNIELSPGQGGQLARAAGAVAQLIA--KEGKFVTVRLPSGEVRLILKECWATIGQVGNVDANNITIGKAGRT--RWLGKR---PVVRGVVMNPVDHPHGGG 234
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_VIBVY (50S ribosomal protein L2 OS=Vibrio vulnificus (strain YJ016) GN=rplB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17 Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 R + + +GM G + G A + GN LP+R+IP G+ + VE G LAR++G YA +++ D ++L SG + + S RA IG+V + L KAG + R P VRGV MNPV+HPHGGG + G Sbjct: 101 RRYIIAPKGMQAGDVIQSGVDAPIKAGNTLPMRNIPVGSTIHCVELTPGKGAQLARSAGAYAQLVAR--DGSYVTIRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGASRW-----RGVRPTVRGVVMNPVDHPHGGGEGRTSG 241
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_VIBVU (50S ribosomal protein L2 OS=Vibrio vulnificus GN=rplB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17 Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = -3 Query: 287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730 R + + +GM G + G A + GN LP+R+IP G+ + VE G LAR++G YA +++ D ++L SG + + S RA IG+V + L KAG + R P VRGV MNPV+HPHGGG + G Sbjct: 101 RRYIIAPKGMQAGDVIQSGVDAPIKAGNTLPMRNIPVGSTIHCVELTPGKGAQLARSAGAYAQLVAR--DGSYVTIRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGASRW-----RGVRPTVRGVVMNPVDHPHGGGEGRTSG 241 The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bpback to top |