CF834718

Overview
NameCF834718
Unique NameCF834718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:287..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_METS4 (50S ribosomal protein L2 OS=Methylobacterium sp. (strain 4-46) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 52/152 (34.21%), Postives = 80/152 (52.63%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 730
            +S+ L  + +  G  V  G++  +  GN +P+ ++P G +V NVE  +G  G LAR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG         R  W    P  RGVAMNP++HPHGGG  +  G
Sbjct:  102 QSYILAPQRVKAGDRVVSGEQVDIKPGNAMPIGNMPVGTIVHNVELKIGKGGALARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCYATVGAVSNPDHMNISLGKAG---------RKRWLGRRPHNRGVAMNPIDHPHGGGEGRTSG 242          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_CLOTH (50S ribosomal protein L2 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 54/150 (36.00%), Postives = 79/150 (52.67%), Query Frame = -3
Query:  272 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQH-IGHASTV 706
            G+  G  V  G+ A +  GN LP+ +IP G  + N+E   G  G L R++G+ A +++   + +  +++LPSG  +++   C+A IGQV         + KAG         R  W    P VRGV MNPV+HPHGGG  +  IG  S V
Sbjct:  109 GLKVGDIVESGENADIKPGNALPLENIPVGTEIHNIELKPGKGGQLVRSAGNVAQLMA--KEGNYAQIRLPSGEVRMVSLKCKATIGQVGNIDHENVSIGKAG---------RKRWMGIRPTVRGVVMNPVDHPHGGGEGKSPIGRPSPV 247          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BACCR (50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 55/146 (37.67%), Postives = 78/146 (53.42%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730
            + + L  + +  G  V  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA IGQV   G  +  L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  101 KRYILAPKSLEVGMEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRASIGQV---GNEQHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BACC4 (50S ribosomal protein L2 OS=Bacillus cereus (strain B4264) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 55/146 (37.67%), Postives = 78/146 (53.42%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730
            + + L  + +  G  V  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA IGQV   G  +  L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  101 KRYILAPKSLEVGMEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRASIGQV---GNEQHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_BACC2 (50S ribosomal protein L2 OS=Bacillus cereus (strain G9842) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 55/146 (37.67%), Postives = 78/146 (53.42%), Query Frame = -3
Query:  305 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 730
            + + L  + +  G  V  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA IGQV   G  +  L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  101 KRYILAPKSLEVGMEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRASIGQV---GNEQHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_ALCBS (50S ribosomal protein L2 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 51/148 (34.46%), Postives = 81/148 (54.73%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + L  +G+     +  G+ A + +GN LP+R+IP G+ + NVE   G  G +AR++G    +++   D     ++L SG  + + + C+A IG+V+    + + L KAG      +  R   P VRG AMNPV+HPHGGG  +  G
Sbjct:  101 RRYILAPKGLKAEDRIQSGEDAPIKLGNALPLRNIPLGSTIHNVEMKPGKGGQIARSAGTSVQLLA--KDGQYVTLRLRSGEMRKVHADCKATIGEVSNSEHSLRSLGKAG-----AKRWRGVRPTVRGAAMNPVDHPHGGGEGRSSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_PROWI (50S ribosomal protein L2, plastid OS=Prototheca wickerhamii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 58/154 (37.66%), Postives = 82/154 (53.25%), Query Frame = -3
Query:  272 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQ-HIGHASTV 730
            + + L   G+  G+ V     A + VGN LP+ +IP G  V NVE   G  G L R++G  A I++   +     + LPSG  ++IP  C A +G+V     +   L KAG +  ++  +R   P VRG AMNPV+HPHGGG  +  IG A  V
Sbjct:  101 KRYILSPTGLKVGEMVIASPNAPITVGNTLPLYNIPLGTSVHNVELQPGAGGQLVRSAGSVAQIVA--KEGQWATLHLPSGEYRLIPQKCWATVGRVGNLDNSNITLGKAGRS--RWLSQR---PHVRGSAMNPVDHPHGGGEGKAPIGRARPV 247          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RK2_MESVI (50S ribosomal protein L2, chloroplastic OS=Mesostigma viride GN=rpl2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 56/135 (41.48%), Postives = 74/135 (54.81%), Query Frame = -3
Query:  305 RGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 709
            RG+  G+ +    +A L VGN LP+  IP G  + N+E   G  G LARA+G  A +I+   +     V+LPSG  ++I   C A IGQV         + KAG    ++  KR   P VRGV MNPV+HPHGGG
Sbjct:  107 RGLSVGKEIVSSVEAPLSVGNSLPLNKIPLGTGIHNIELSPGQGGQLARAAGAVAQLIA--KEGKFVTVRLPSGEVRLILKECWATIGQVGNVDANNITIGKAGRT--RWLGKR---PVVRGVVMNPVDHPHGGG 234          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_VIBVY (50S ribosomal protein L2 OS=Vibrio vulnificus (strain YJ016) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + +  +GM  G  +  G  A +  GN LP+R+IP G+ +  VE   G    LAR++G YA +++   D     ++L SG  + + S  RA IG+V       + L KAG +       R   P VRGV MNPV+HPHGGG  +  G
Sbjct:  101 RRYIIAPKGMQAGDVIQSGVDAPIKAGNTLPMRNIPVGSTIHCVELTPGKGAQLARSAGAYAQLVAR--DGSYVTIRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGASRW-----RGVRPTVRGVVMNPVDHPHGGGEGRTSG 241          
BLAST of CF834718 vs. ExPASy Swiss-Prot
Match: RL2_VIBVU (50S ribosomal protein L2 OS=Vibrio vulnificus GN=rplB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = -3
Query:  287 RSFSLPLRGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 730
            R + +  +GM  G  +  G  A +  GN LP+R+IP G+ +  VE   G    LAR++G YA +++   D     ++L SG  + + S  RA IG+V       + L KAG +       R   P VRGV MNPV+HPHGGG  +  G
Sbjct:  101 RRYIIAPKGMQAGDVIQSGVDAPIKAGNTLPMRNIPVGSTIHCVELTPGKGAQLARSAGAYAQLVAR--DGSYVTIRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGASRW-----RGVRPTVRGVVMNPVDHPHGGGEGRTSG 241          
The following BLAST results are available for this feature:
BLAST of CF834718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METS44.950e-1734.2150S ribosomal protein L2 OS=Methylobacterium sp. (... [more]
RL2_CLOTH4.950e-1736.0050S ribosomal protein L2 OS=Clostridium thermocell... [more]
RL2_BACCR4.950e-1737.6750S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC44.950e-1737.6750S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC24.950e-1737.6750S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_ALCBS4.950e-1734.4650S ribosomal protein L2 OS=Alcanivorax borkumensi... [more]
RK2_PROWI4.950e-1737.6650S ribosomal protein L2, plastid OS=Prototheca wi... [more]
RK2_MESVI4.950e-1741.4850S ribosomal protein L2, chloroplastic OS=Mesosti... [more]
RL2_VIBVY6.465e-1736.4950S ribosomal protein L2 OS=Vibrio vulnificus (str... [more]
RL2_VIBVU6.465e-1736.4950S ribosomal protein L2 OS=Vibrio vulnificus GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834718 ID=CF834718; Name=CF834718; organism=Citrus sinensis; type=EST; length=732bp
CCCCTTTTTTAGAGCAATTAGCTAAACTTTAAGCCAACATAATTTAACAT
CAGGATCCTTCCAAAGATCCAAATCTGAACAAATTTTTCTAAGGTAATGA
TGCAGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTTG
TAACACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCT
TGTCCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTG
GCCAGGAGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGT
GGTTACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGC
ACCTTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACC
AGCTTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAA
TCATCGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGC
TTGACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATA
ATCACCAGAAGCTCTAGCCAAAACACCGCGATCACCAACATGATGCTCAA
CGTTGCAAACAACAGCTCCTTCAGGGATAGATCTAACGGGCAGCACATTA
CCAACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGACCCGTGTA
CATACCCCTCAGCGGCAATGAAAAGCTCCTTT
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