CF834719

Overview
NameCF834719
Unique NameCF834719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_LISMC (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 75/220 (34.09%), Postives = 113/220 (51.36%), Query Frame = 3
Query:    6 PSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   G  +  L+  G A   ++  KR   P VRG  MNP +HPHGG
Sbjct:   29 PEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_LISIN (50S ribosomal protein L2 OS=Listeria innocua GN=rplB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 75/220 (34.09%), Postives = 113/220 (51.36%), Query Frame = 3
Query:    6 PSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   G  +  L+  G A   ++  KR   P VRG  MNP +HPHGG
Sbjct:   29 PEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_ERWCT (50S ribosomal protein L2 OS=Erwinia carotovora subsp. atroseptica GN=rplB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 66/185 (35.68%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGIRPTVRGTAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_CLOCE (50S ribosomal protein L2 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 67/194 (34.54%), Postives = 105/194 (54.12%), Query Frame = 3
Query:   78 HHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            HH  G  Q +R +DF      +K  VA I +DP R A +A + +        +K   +A  G+  G FV  G+ + +  GN LP+ +IP G+++ N+E   G  G + RA+G+ A +++   + +  +++LPSG  +++   CRA +GQ+   G  E   +K G A  K  +     P VRGV MNPV+HPHGG
Sbjct:   53 HHGGGNRQKYRVIDFKRDKDGIKAKVATIEYDPNRTANIALLNYADG-----EKRYILAPVGLKVGDFVESGESSDIRTGNALPLANIPVGSMIHNIELKPGKGGQMVRAAGNAAQLMA--KEGEYAQIRLPSGEVRMVRINCRATLGQI---GNIEHENVKIGKAGRKRWM--GVRPTVRGVVMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SHEAM (50S ribosomal protein L2 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.719e-23
Identity = 70/210 (33.33%), Postives = 107/210 (50.95%), Query Frame = 3
Query:   33 RAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +++  G  +  +  T H  G     +R +DF      + G +  + +DP R A +A V +        ++   +AA+GM  G  V  G  A + VGN LP+R+IP G+VV  VE   G    +AR++G Y  +++   D +   ++L SG  + +P  CRA +G+V       + L KAG      +  R   P VRGVAMNPV+HPHGG
Sbjct:   37 KSKTGGRNNTGRITTRHVGGGHKQHYRLIDFKRNKDGIPGKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKVVSGIDADIKVGNALPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGEYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_PINKO (50S ribosomal protein L2, chloroplastic OS=Pinus koraiensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.245e-23
Identity = 71/210 (33.81%), Postives = 110/210 (52.38%), Query Frame = 3
Query:   27 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +I A+ +G G        H++    +R +DF     ++ G +  I +DP R A + +V +++       K   +   G+  G  +  G KA + +GNVLP+ ++P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A IGQV       +   KAG    ++  KR+   +VRGVAMNPV+HPHGG
Sbjct:   49 IITARHRGGG--------HKR---LYRQIDFRRDKEHISGEIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNVLPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDHPHGG 235          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SODGM (50S ribosomal protein L2 OS=Sodalis glossinidius (strain morsitans) GN=rplB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.933e-23
Identity = 66/185 (35.68%), Postives = 97/185 (52.43%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G+ +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + I S CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGG
Sbjct:   62 YRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGEQIQSGVDAAIKAGNALPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIQSECRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_BUCBP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rplB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.933e-23
Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = 3
Query:   12 KEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            K +  +IR   K  G  +  +  T H  G  +  +R +DF      +  +V  + +DP R + +A + +    R        +A++G+  G  +  G  A + +GN LP+++IP G V+ NVE   G  G +AR++G Y  +IS   +N    ++L SG  + + S CRA IG+V       + L KAG +       R   P VRG AMNPV+HPHGG
Sbjct:   28 KPISSLIRKNSKSGGRNNCGRITTRHIGGRHKRFYRIIDFKRNKDNIPAIVERLEYDPNRSSNIALILYSDGDR-----RYILASKGLMVGSKIVSGFNAEIKIGNALPMKNIPIGTVIHNVEIKPGKGGQIARSAGTYVQLISR--ENSYVTIRLRSGETRKLESKCRATIGEVGNSESMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.933e-23
Identity = 69/194 (35.57%), Postives = 101/194 (52.06%), Query Frame = 3
Query:   81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+ +IP G  + N+E  +G  G LARA+G  A +IS   +  +  VKLPSG  ++I   C A +GQV   G   K L +AG+   ++  KR   P VRGVAMNPV+HPHGG
Sbjct:   51 HRGGGHKRLYRQIDFRRNENNIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGARIGDTIVSGTEVPIKMGNALPLTNIPLGTAIHNIEITLGKGGQLARAAGAVAKLIS--KEGKSAAVKLPSGEVRLISQNCSATVGQVGNVGVNRKSLGRAGS--KRWLGKR---PVVRGVAMNPVDHPHGG 232          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_PHOLL (50S ribosomal protein L2 OS=Photorhabdus luminescens subsp. laumondii GN=rplB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.830e-23
Identity = 65/185 (35.14%), Postives = 97/185 (52.43%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A++  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGG
Sbjct:   62 YRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDASIKTGNALPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVLSDCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_LISMC1.316e-2334.0950S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISIN1.316e-2334.0950S ribosomal protein L2 OS=Listeria innocua GN=rp... [more]
RL2_ERWCT1.316e-2335.6850S ribosomal protein L2 OS=Erwinia carotovora sub... [more]
RL2_CLOCE1.316e-2334.5450S ribosomal protein L2 OS=Clostridium cellulolyt... [more]
RL2_SHEAM1.719e-2333.3350S ribosomal protein L2 OS=Shewanella amazonensis... [more]
RK2_PINKO2.245e-2333.8150S ribosomal protein L2, chloroplastic OS=Pinus k... [more]
RL2_SODGM2.933e-2335.6850S ribosomal protein L2 OS=Sodalis glossinidius (... [more]
RL2_BUCBP2.933e-2332.4250S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RK2_PELHO2.933e-2335.5750S ribosomal protein L2, chloroplastic OS=Pelargo... [more]
RL2_PHOLL3.830e-2335.1450S ribosomal protein L2 OS=Photorhabdus luminesce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bp
CGGTGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGT
GCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCA
GTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCG
TCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTC
ACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGC
CGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCA
CTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCT
GTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAG
AGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACA
CCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGC
TGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCC
CCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACT
GCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCAT
GGAGGA
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