CF834719
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_LISMC (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplB PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23 Identity = 75/220 (34.09%), Postives = 113/220 (51.36%), Query Frame = 3 Query: 6 PSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGG 656 P K + R ++ ++ G + K H G Q+R +DF + G VA I +DP R A +A + + +K IAA+G+ GQ +Y G +A + VGN L ++ IP G V+ N+E G G L R++G A ++ + ++L SG ++I + CRA IGQV G + L+ G A ++ KR P VRG MNP +HPHGG Sbjct: 29 PEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDHPHGG 234
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_LISIN (50S ribosomal protein L2 OS=Listeria innocua GN=rplB PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23 Identity = 75/220 (34.09%), Postives = 113/220 (51.36%), Query Frame = 3 Query: 6 PSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHPHGG 656 P K + R ++ ++ G + K H G Q+R +DF + G VA I +DP R A +A + + +K IAA+G+ GQ +Y G +A + VGN L ++ IP G V+ N+E G G L R++G A ++ + ++L SG ++I + CRA IGQV G + L+ G A ++ KR P VRG MNP +HPHGG Sbjct: 29 PEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDHPHGG 234
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_ERWCT (50S ribosomal protein L2 OS=Erwinia carotovora subsp. atroseptica GN=rplB PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23 Identity = 66/185 (35.68%), Postives = 96/185 (51.89%), Query Frame = 3 Query: 102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + S CRA +G+V + L KAG A R P VRG AMNPV+HPHGG Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGIRPTVRGTAMNPVDHPHGG 234
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_CLOCE (50S ribosomal protein L2 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplB PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23 Identity = 67/194 (34.54%), Postives = 105/194 (54.12%), Query Frame = 3 Query: 78 HHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656 HH G Q +R +DF +K VA I +DP R A +A + + +K +A G+ G FV G+ + + GN LP+ +IP G+++ N+E G G + RA+G+ A +++ + + +++LPSG +++ CRA +GQ+ G E +K G A K + P VRGV MNPV+HPHGG Sbjct: 53 HHGGGNRQKYRVIDFKRDKDGIKAKVATIEYDPNRTANIALLNYADG-----EKRYILAPVGLKVGDFVESGESSDIRTGNALPLANIPVGSMIHNIELKPGKGGQMVRAAGNAAQLMA--KEGEYAQIRLPSGEVRMVRINCRATLGQI---GNIEHENVKIGKAGRKRWM--GVRPTVRGVVMNPVDHPHGG 234
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SHEAM (50S ribosomal protein L2 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplB PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.719e-23 Identity = 70/210 (33.33%), Postives = 107/210 (50.95%), Query Frame = 3 Query: 33 RAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656 +++ G + + T H G +R +DF + G + + +DP R A +A V + ++ +AA+GM G V G A + VGN LP+R+IP G+VV VE G +AR++G Y +++ D + ++L SG + +P CRA +G+V + L KAG + R P VRGVAMNPV+HPHGG Sbjct: 37 KSKTGGRNNTGRITTRHVGGGHKQHYRLIDFKRNKDGIPGKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKVVSGIDADIKVGNALPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGEYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDHPHGG 234
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_PINKO (50S ribosomal protein L2, chloroplastic OS=Pinus koraiensis GN=rpl2 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.245e-23 Identity = 71/210 (33.81%), Postives = 110/210 (52.38%), Query Frame = 3 Query: 27 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656 +I A+ +G G H++ +R +DF ++ G + I +DP R A + +V +++ K + G+ G + G KA + +GNVLP+ ++P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A IGQV + KAG ++ KR+ +VRGVAMNPV+HPHGG Sbjct: 49 IITARHRGGG--------HKR---LYRQIDFRRDKEHISGEIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNVLPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDHPHGG 235
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SODGM (50S ribosomal protein L2 OS=Sodalis glossinidius (strain morsitans) GN=rplB PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.933e-23 Identity = 66/185 (35.68%), Postives = 97/185 (52.43%), Query Frame = 3 Query: 102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G+ + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + I S CRA +G+V + L KAG + R P VRG AMNPV+HPHGG Sbjct: 62 YRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGEQIQSGVDAAIKAGNALPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIQSECRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGG 234
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_BUCBP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rplB PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.933e-23 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = 3 Query: 12 KEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656 K + +IR K G + + T H G + +R +DF + +V + +DP R + +A + + R +A++G+ G + G A + +GN LP+++IP G V+ NVE G G +AR++G Y +IS +N ++L SG + + S CRA IG+V + L KAG + R P VRG AMNPV+HPHGG Sbjct: 28 KPISSLIRKNSKSGGRNNCGRITTRHIGGRHKRFYRIIDFKRNKDNIPAIVERLEYDPNRSSNIALILYSDGDR-----RYILASKGLMVGSKIVSGFNAEIKIGNALPMKNIPIGTVIHNVEIKPGKGGQIARSAGTYVQLISR--ENSYVTIRLRSGETRKLESKCRATIGEVGNSESMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGG 234
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.933e-23 Identity = 69/194 (35.57%), Postives = 101/194 (52.06%), Query Frame = 3 Query: 81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656 HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ +IP G + N+E +G G LARA+G A +IS + + VKLPSG ++I C A +GQV G K L +AG+ ++ KR P VRGVAMNPV+HPHGG Sbjct: 51 HRGGGHKRLYRQIDFRRNENNIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGARIGDTIVSGTEVPIKMGNALPLTNIPLGTAIHNIEITLGKGGQLARAAGAVAKLIS--KEGKSAAVKLPSGEVRLISQNCSATVGQVGNVGVNRKSLGRAGS--KRWLGKR---PVVRGVAMNPVDHPHGG 232
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_PHOLL (50S ribosomal protein L2 OS=Photorhabdus luminescens subsp. laumondii GN=rplB PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.830e-23 Identity = 65/185 (35.14%), Postives = 97/185 (52.43%), Query Frame = 3 Query: 102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A++ GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + S CRA +G+V + L KAG + R P VRG AMNPV+HPHGG Sbjct: 62 YRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDASIKTGNALPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVLSDCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGG 234 The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bpback to top |