CF834719

Overview
NameCF834719
Unique NameCF834719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_NEIMF (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 70/210 (33.33%), Postives = 104/210 (49.52%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_NEIMA (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup A GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 70/210 (33.33%), Postives = 104/210 (49.52%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_MYCA5 (50S ribosomal protein L2 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 67/205 (32.68%), Postives = 102/205 (49.76%), Query Frame = 3
Query:   48 GAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            G  +  K  T H  G  +  +R +DF      +   V  I +DP R A ++ V +        +K   I+ +G+  GQ +  G++  + +GN LP+++IPEG  V N+E      GV+AR++G  A I+  +       ++L SG  + I + CRA +G+V   G  E  L+  G A       R   P VRG AMNP +HPHGG
Sbjct:   43 GRNNQGKITTRHHGGRLKRFYRLVDFKRNKDDILATVKTIEYDPNRSANISLVVYADG-----EKRYIISPKGLKVGQKIISGEQVDIQIGNSLPLKNIPEGTYVHNIEMQPKQGGVIARSAGSSAQILGKDETGRYIILRLKSGEVRKILALCRATVGEV---GNEEHSLVNIGKAGR--NRLRGIRPTVRGSAMNPNDHPHGG 237          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_JANSC (50S ribosomal protein L2 OS=Jannaschia sp. (strain CCS1) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 65/209 (31.10%), Postives = 100/209 (47.85%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            I A+R+G G+              +R +DF      +   V  I +DP R A +A V +        ++   +A + +  G  V   KKA +  GN +P   +P G +V N+E   G  G +ARA+G YA  +    D    +++L SG  +++   C A +G V+    + + L KAG   H  +      P VRGVAMNP++HPHGG
Sbjct:   49 ITARRRGGGA-----------KRLYRIVDFKRTKFDVSATVERIEYDPNRTAFIALVRYEDG-----EQNYILAPQRLGVGDKVVASKKADIKPGNAMPFSGLPIGTIVHNIELKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNLGKAGRVRHMGK-----RPSVRGVAMNPIDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_HAEIN (50S ribosomal protein L2 OS=Haemophilus influenzae GN=rplB PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 65/186 (34.95%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  + + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  II+   +  T R++  SG  + + + C A IG+V       + L KAG N +   R      P VRG AMNPV+HPHGG
Sbjct:   62 YRLIDFKRNKLDIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLSVGDQIQAGINSPIKVGNSLPMRNIPVGSTVHNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLR--SGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIR------PTVRGTAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_HAEIG (50S ribosomal protein L2 OS=Haemophilus influenzae (strain PittGG) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 65/186 (34.95%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  + + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  II+   +  T R++  SG  + + + C A IG+V       + L KAG N +   R      P VRG AMNPV+HPHGG
Sbjct:   62 YRLIDFKRNKLDIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLSVGDQIQAGINSPIKVGNSLPMRNIPVGSTVHNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLR--SGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIR------PTVRGTAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_HAEIE (50S ribosomal protein L2 OS=Haemophilus influenzae (strain PittEE) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 65/186 (34.95%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  + + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  II+   +  T R++  SG  + + + C A IG+V       + L KAG N +   R      P VRG AMNPV+HPHGG
Sbjct:   62 YRLIDFKRNKLDIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLSVGDQIQAGINSPIKVGNSLPMRNIPVGSTVHNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLR--SGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIR------PTVRGTAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_HAEI8 (50S ribosomal protein L2 OS=Haemophilus influenzae (strain 86-028NP) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 65/186 (34.95%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  + + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  II+   +  T R++  SG  + + + C A IG+V       + L KAG N +   R      P VRG AMNPV+HPHGG
Sbjct:   62 YRLIDFKRNKLDIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLSVGDQIQAGINSPIKVGNSLPMRNIPVGSTVHNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLR--SGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIR------PTVRGTAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_CLONN (50S ribosomal protein L2 OS=Clostridium novyi (strain NT) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 73/209 (34.93%), Postives = 101/209 (48.33%), Query Frame = 3
Query:   39 QRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH-KFRVKRNCWPKVRGVAMNPVEHPHGG 656
            ++ G  S  K    HR G A+  +R +DF      +   VA I +DP R A +A V +        +K   IA  G+  G  V  G  A + VGN LP+++IP G V+ NVE   G    L RA+G  A +++   +     ++LPSG  + +   CRA IG V+        + KAG   H  FR      P VRG  MNP +HPHGG
Sbjct:   39 KKAGRNSQGKITVRHRGGGAKRKYRIIDFKRTKDGIPAKVASIEYDPNRTAYIALVVYADG-----EKRYIIAPVGLKVGDVVMSGVDADIKVGNALPLKNIPVGTVIHNVELQAGKGAQLVRAAGSSAQLMA--KEGKYAILRLPSGEMRYVRIECRAAIGTVSNVTNDIINIGKAGRKRHLGFR------PTVRGSVMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_CHLSY (50S ribosomal protein L2 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 74/215 (34.42%), Postives = 108/215 (50.23%), Query Frame = 3
Query:   24 RVIRAQRKGAGSVFKSH--THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            R+I   RK AG   +      HR G  +  +R +DF      +   V  I +DP R A +A + +        +K   IA  G+  G  V  G  A + VGN LP+ +IP G  + N+E  +G  GVL R++G  A +++   + D   V++PSG  ++I   C A IGQV         L KAG +  ++  +R   P+VRG AMNP +HPHGG
Sbjct:   32 RLIEPLRKKAGRNNQGRITVRHRGGGHKRFYRIIDFKRNKFGVPAKVQAIEYDPNRTARIALLAYADG-----EKRYIIAPLGLKVGDTVMSGPDAEIRVGNALPLSAIPLGTQIHNIELEIGRGGVLVRSAGTAAQLMA--KEGDYAIVRMPSGEMRMIHLRCMATIGQVGNVDHQNIRLGKAGRS--RWLGRR---PRVRGAAMNPRDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NEIMF4.682e-2133.3350S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_NEIMA4.682e-2133.3350S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_MYCA54.682e-2132.6850S ribosomal protein L2 OS=Mycoplasma arthritidis... [more]
RL2_JANSC4.682e-2131.1050S ribosomal protein L2 OS=Jannaschia sp. (strain... [more]
RL2_HAEIN4.682e-2134.9550S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEIG4.682e-2134.9550S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEIE4.682e-2134.9550S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEI84.682e-2134.9550S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_CLONN4.682e-2134.9350S ribosomal protein L2 OS=Clostridium novyi (str... [more]
RL2_CHLSY4.682e-2134.4250S ribosomal protein L2 OS=Chloroflexus aurantiac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bp
CGGTGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGT
GCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCA
GTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCG
TCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTC
ACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGC
CGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCA
CTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCT
GTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAG
AGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACA
CCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGC
TGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCC
CCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACT
GCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCAT
GGAGGA
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