CF834719

Overview
NameCF834719
Unique NameCF834719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:55..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 65/198 (32.83%), Postives = 100/198 (50.51%), Query Frame = 3
Query:   81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            HR G  +  +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+HPHGG
Sbjct:   53 HRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 65/198 (32.83%), Postives = 100/198 (50.51%), Query Frame = 3
Query:   81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            HR G  +  +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+HPHGG
Sbjct:   53 HRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_ONYPE (50S ribosomal protein L2 OS=Onion yellows phytoplasma GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 3
Query:   27 VIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            V    + G  +  K    HR G  +  +R +DF      + G VA I +DP R A +A + +        +K   +A +G+  G  +  GK+A + V N LP+ +IP G  V N+E   G  G +AR++G +  IIS   ++    ++L SG  + +   CRA IG++   G     L+  G A  K  +     P VRG AMNP +HPHGG
Sbjct:   35 VSHKDQAGRNNQGKITVRHRGGGVKRKYRLIDFKRNKDNIVGKVATIEYDPNRSANIALIHYLDG-----EKRYILAPKGLTVGMQIVSGKEADIKVANCLPLMNIPVGTTVHNIELKPGKGGQIARSAGSFCQIISR--EDKYVLLRLQSGEVRKVLGTCRATIGEI---GNESYKLINYGKAGKKRFL--GIRPTVRGSAMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_MYCMS (50S ribosomal protein L2 OS=Mycoplasma mycoides subsp. mycoides SC GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 65/200 (32.50%), Postives = 100/200 (50.00%), Query Frame = 3
Query:   75 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            T H+ G    ++R +DF      + G ++ I +DP R A +  + +        +K   + A+GM  G  V   + A + VGNV P+++IPEG ++ NVE   G  G +AR++G    ++  + D     ++L SG  + + + C A IG+V   G  E  L+  G A       RN W    P VRG  MNP +HPHGG
Sbjct:   53 TRHKGGGHKQKYRIIDFKRNKRDIFGTISTIEYDPNRNAFICLINYVDG-----EKRYILFAKGMQVGMKVVASENADIKVGNVAPLKNIPEGTLLHNVELKPGKGGQIARSAGSSVQLLGKDDDGKYVTLRLSSGEVRKVLAECYATIGEV---GNEEYNLVNWGKA------GRNRWRGIRPTVRGSVMNPNDHPHGG 238          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_FRATO (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 65/211 (30.81%), Postives = 103/211 (48.82%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGG
Sbjct:   37 VKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGG 235          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_FRATH (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 65/211 (30.81%), Postives = 103/211 (48.82%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGG
Sbjct:   37 VKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGG 235          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_FRATF (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 65/211 (30.81%), Postives = 103/211 (48.82%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGG
Sbjct:   37 VKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGG 235          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_DIAST (50S ribosomal protein L2 OS=Diaphorobacter sp. (strain TPSY) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 70/211 (33.18%), Postives = 104/211 (49.29%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGG 656
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A V +        ++   IA   +  G  +  G +A + VGN LP+R+IP G+ +  +E   G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG       VKR     P VRGVAMNP++HPHGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFRRNKDAIPAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKPGAGAQIARSAGTSATLLAR--EGVYAQVRMRSGEVRKIHIECRATIGEVANEEHSLRQLGKAG-------VKRWMGIRPTVRGVAMNPIDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_CLOBM (50S ribosomal protein L2 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 64/186 (34.41%), Postives = 94/186 (50.54%), Query Frame = 3
Query:   99 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            ++R +DF      +   V  I +DP R A +A V +        +K   IA  G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGG
Sbjct:   61 KYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYADG-----EKRYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_CLOBL (50S ribosomal protein L2 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 64/186 (34.41%), Postives = 94/186 (50.54%), Query Frame = 3
Query:   99 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            ++R +DF      +   V  I +DP R A +A V +        +K   IA  G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G    L R++G+ A +++   + D ++V+LPSG  + I   CRA IG V+        + KAG   H         P VRG  MNP +HPHGG
Sbjct:   61 KYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYADG-----EKRYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_RICCN1.362e-2032.8350S ribosomal protein L2 OS=Rickettsia conorii GN=... [more]
RL2_RICAE1.362e-2032.8350S ribosomal protein L2 OS=Rickettsia africae (st... [more]
RL2_ONYPE1.362e-2032.5550S ribosomal protein L2 OS=Onion yellows phytopla... [more]
RL2_MYCMS1.362e-2032.5050S ribosomal protein L2 OS=Mycoplasma mycoides su... [more]
RL2_FRATO1.362e-2030.8150S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATH1.362e-2030.8150S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATF1.362e-2030.8150S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_DIAST1.362e-2033.1850S ribosomal protein L2 OS=Diaphorobacter sp. (st... [more]
RL2_CLOBM1.362e-2034.4150S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CLOBL1.362e-2034.4150S ribosomal protein L2 OS=Clostridium botulinum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bp
CGGTGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGT
GCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCA
GTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCG
TCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTC
ACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGC
CGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCA
CTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCT
GTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAG
AGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACA
CCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGC
TGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCC
CCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACT
GCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCAT
GGAGGA
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