CF834719

Overview
NameCF834719
Unique NameCF834719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:55..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SULIK (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.503e-39
Identity = 89/214 (41.59%), Postives = 128/214 (59.81%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ +  QR G GS  F+S +  R G  ++ ++      G+L G V +I+H+PG  AP+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGG
Sbjct:    1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGG 202          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SULIA (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.503e-39
Identity = 89/214 (41.59%), Postives = 128/214 (59.81%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ +  QR G GS  F+S +  R G  ++ ++      G+L G V +I+H+PG  AP+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGG
Sbjct:    1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGG 202          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.892e-38
Identity = 88/214 (41.12%), Postives = 127/214 (59.35%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ +  QR G GS  F+S +  R G  ++ ++      G+L G V +I+H+PG   P+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGG
Sbjct:    1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNTPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGG 202          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.227e-38
Identity = 90/214 (42.06%), Postives = 125/214 (58.41%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ +  QR G G + F+S +  R GPA++ +++     G  KG + +I+H+PG  AP+ +V   +  ++        A +G+  GQ +  GK AT+  GN++ V  +PEG V+CNVE   GD G  ARA+G YAVI       +   +KL S     +    RA +G +AGGG  EKPLLKAGN Y K+RV+   WP VRGVAMN V HPHGG
Sbjct:    1 MGKKLLQQRAGRGGINFRSPSWRRVGPARYPNIE-----GDHKGKIIDILHNPGVTAPVVKVKLDNGLQFY-----IPAVQGVAVGQEISIGKNATISNGNIVEVGQLPEGTVICNVEKLKGDGGKFARAAGSYAVI--SGKAGNKVLIKLSSEKIVEVSQNARATVGIIAGGGFVEKPLLKAGNNYWKYRVRAVKWPVVRGVAMNAVSHPHGG 202          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.390e-38
Identity = 84/215 (39.07%), Postives = 126/215 (58.60%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ + +Q +G G+  +++ +H  K   +   +D    N  L+G V  I HDP R AP+A+V F +       +ELF+ A+EG+  G  + CG  A +  GN++P+ ++PEG  +CNVE    D G   R+SG YA +++H      T V +PSG  K +   CRA++G VAG GR ++P LKAG  YHK + +   +P+V  VAMNP +HP GG
Sbjct:    1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENSSLRGEVVGIEHDPARSAPIAKVAFENG------EELFLLASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTHEATR--TAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGG 204          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.092e-37
Identity = 87/214 (40.65%), Postives = 123/214 (57.48%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ +  QR G G + F+S +  R G A+  +++     G   G V +I+H+PG  APLA +      ++        + +G+  GQ +  GK A +  GN++ V ++PEG ++ N+E   GD G  AR++G Y V++      D   VKL S     + S  RA++G VAGGG TEKPLLKAGN Y K++VK   WP VRGVAMN V HPHGG
Sbjct:    1 MGKKLLQQRAGRGGINFRSPSWRRVGKAKIPNIE-----GEHIGKVIDIVHNPGTNAPLALIKLDDGTKFYVP-----SVQGLVVGQKIQIGKNAAISNGNIVEVGNVPEGTIISNIEKTRGDGGKFARSAGTYGVVVGKT--GDKVLVKLSSEKIAQVSSNARAIVGVVAGGGVTEKPLLKAGNNYWKYKVKAKKWPHVRGVAMNAVSHPHGG 202          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.092e-37
Identity = 87/214 (40.65%), Postives = 126/214 (58.88%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ +  QR G GS  F++    R G  ++ ++      G+  G V +I+H+PG  AP+A V   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   ++LPS   K + +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGG
Sbjct:    1 MGKNLLQQRAGKGSPTFRNPGWLRIGKVRYPNIF-----GHFIGKVIDIVHNPGMNAPVALVKLENGTKFLMQ-----AIQGLVVNQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDRVLIRLPSDKIKAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGG 202          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.660e-37
Identity = 74/173 (42.77%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  141 KGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +G V +I+H+  RGAP+A ++F       K+ +  + A+EGMYTGQ +  G  A + +GN+  ++++PEG  V +VE   GD G  A  +G Y+++++H  + + T +K+PSG K  + S CR ++G VAGGG  +KPLLKA  A++K + + + +P+VRGVAMNPVEH HGG
Sbjct:   34 EGEVIDIVHERSRGAPVAIISF-------KEDDCMVPASEGMYTGQKILIGDDAPIDIGNITKIKNVPEGMAVNSVESVYGDGGTFAMVNGSYSLVVNHRKETNETVIKIPSGKKLTVSSECRCIVGVVAGGGIHDKPLLKASVAHYKAKARGHVFPRVRGVAMNPVEHIHGG 199          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.038e-36
Identity = 85/214 (39.72%), Postives = 119/214 (55.61%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ I +Q +G G+  +++ +H  K  A+        ++  +   V +I HD  R  P+A V           +   +A EG+ TG  VY G    +  GN+  +++IPEG  VCN+E   GD G   RASG +  ++S   D     V++PSG +K     CRAMIG VAGGGRT+KP +KAG  YHK + K   WP+VRGVAMN V+HP GG
Sbjct:    1 MGKRIISQNRGKGTPTYRAPSHRYKTDAKLLRF----KDEVVAAKVIDIQHDSARNGPVALVKLPDG-----SETYILAVEGLGTGDVVYAGDNVEIASGNITYLKNIPEGTPVCNIEAQPGDGGKFIRASGTFGFVVSREADK--VLVQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAVDHPFGG 203          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36
Identity = 84/214 (39.25%), Postives = 119/214 (55.61%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            M + I +Q +G GS  +++ +H  K   +   +D       L G V  I HDP R AP+A V F +      +K+  +  EG+  G+ + CG  A +  GN LP+  IPEG  +CN+E    D G  AR+SG YA ++S   +     V++PSG  K     CRA IG VAGGGR ++P LKAG  YHK + +   +P+V G+AMN V+HP GG
Sbjct:    1 MAKRIISQNRGRGSPTYRAPSHKYKAELKHPRVD---EESTLNGTVIGIEHDPARSAPIAMVAFENG-----KKQFIVVPEGISVGEKLSCGVSAEVKPGNTLPLAEIPEGIPICNIESKPNDGGQYARSSGVYATLVSR--ELSKVVVRMPSGVLKWFHPKCRATIGIVAGGGRVDRPFLKAGKKYHKMKARAAKYPRVSGIAMNVVDHPFGG 204          
The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SULIK6.503e-3941.5950S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIA6.503e-3941.5950S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIN1.892e-3841.1250S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULAC3.227e-3842.0650S ribosomal protein L2P OS=Sulfolobus acidocalda... [more]
RL2_METAC9.390e-3839.0750S ribosomal protein L2P OS=Methanosarcina acetiv... [more]
RL2_SULTO2.092e-3740.6550S ribosomal protein L2P OS=Sulfolobus tokodaii G... [more]
RL2_SULSO2.092e-3740.6550S ribosomal protein L2P OS=Sulfolobus solfataric... [more]
RL8_ENCCU4.660e-3742.7760S ribosomal protein L8 OS=Encephalitozoon cunicu... [more]
RL2_ARCFU1.038e-3639.7250S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]
RL2_METBU3.021e-3639.2550S ribosomal protein L2P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bp
CGGTGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGT
GCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCA
GTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCG
TCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTC
ACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGC
CGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCA
CTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCT
GTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAG
AGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACA
CCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGC
TGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCC
CCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACT
GCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCAT
GGAGGA
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